PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca30872.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family B3
Protein Properties Length: 517aa    MW: 60154 Da    PI: 8.7841
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca30872.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B361.21.8e-19147236199
                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                 ffk++  + +++++ l++p++f+e+++   + s  +tl  +s ++W+v+l  +++ + ++l++GW+ Fv ++g++  Df+vF+++g+++f   v vf++
  Dca30872.1 147 FFKIM--PRNFENQ-LRIPRHFVENFQC--RLSGSVTLIGPSRNEWKVQL--ERREEDVWLSSGWEAFVIDHGVDLHDFLVFTYVGDTTF--EVAVFSA 236
                 78888..7777765.********88864..46678***************..*********************************98888..8888765 PP
2B340.35.8e-13406487889
                 -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
          B3   8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                  +v +   l++pk+ a ++++ k  +++l+++  ++  W v +++ r++  ++ ++  W eFv +n+L+egD +vF+++++ +
  Dca30872.1 406 THVYRGLYLTIPKEWAVQNMSRKDHEVELRVNG-TNDFWLVGCRWtRNGAVQCQFRPRWAEFVLDNNLEEGDACVFEMIQKGN 487
                 566666679**********98888877777555.7799*******66666669************************987533 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.2E-23144239IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.142144237IPR003340B3 DNA binding domain
CDDcd100174.63E-18145235No hitNo description
SuperFamilySSF1019368.63E-23146239IPR015300DNA-binding pseudobarrel domain
PfamPF023622.4E-16147235IPR003340B3 DNA binding domain
SMARTSM010191.3E-16147237IPR003340B3 DNA binding domain
SuperFamilySSF1019361.59E-14393502IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.8E-14394502IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.939399504IPR003340B3 DNA binding domain
SMARTSM010191.9E-5400504IPR003340B3 DNA binding domain
CDDcd100171.63E-11402502No hitNo description
PfamPF023621.1E-10403487IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
MEKTAFRSCS SSKNQHPIFL SKSASEHPYG RFLYQKRITP SKMQGFWRKL RSIFKKEKRS  60
FGSGRHSEAI IVPYNYYSYA KNFDDQSLCF AEPENLCRSF SARFAGPSSK MFNRVRSVRT  120
EMADICRTCK AKAKCEYWHK RSVTKKFFKI MPRNFENQLR IPRHFVENFQ CRLSGSVTLI  180
GPSRNEWKVQ LERREEDVWL SSGWEAFVID HGVDLHDFLV FTYVGDTTFE VAVFSATGCE  240
RESSHFTRVD SENSLCRCTL HVEGNAYVME DVSSDFELGE TEVNFPQASA KESHKTKAEA  300
SHYNAVYKGK RKLGSLPRSD QSVESDNDFE DEDEEEEEEE EGAEGSFSCS RHPSTFDRKQ  360
TQKCHISRRR RVTEKEKQRA CDLSTKFINR RKSSGIPMVG LIMLRTHVYR GLYLTIPKEW  420
AVQNMSRKDH EVELRVNGTN DFWLVGCRWT RNGAVQCQFR PRWAEFVLDN NLEEGDACVF  480
EMIQKGNTQA KTRPVFLVHI FRVVQEVVPL TPKRMVI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.13e-26B3 family protein