PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Dca30695.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
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Family | MYB | ||||||||
Protein Properties | Length: 442aa MW: 48554.5 Da PI: 6.5094 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.5 | 1.5e-18 | 40 | 85 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+W++eEd +l ++v+++G+++W +Iar ++ gR++k+c++rw + Dca30695.1 40 RGPWSPEEDAILTELVTKFGPKNWGLIARGIP-GRSGKSCRLRWCNQ 85 89******************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 50.6 | 4.6e-16 | 92 | 136 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r+++T+eEd +++ + +G++ W++Ia+ ++ gRt++ +k++w++ Dca30695.1 92 RKPFTEEEDHIIISSHVIHGNK-WAAIAKLLP-GRTDNAIKNHWNST 136 789*******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 23.417 | 35 | 90 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 9.73E-31 | 38 | 133 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.2E-16 | 39 | 88 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.1E-17 | 40 | 85 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.4E-25 | 41 | 93 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.75E-15 | 42 | 84 | No hit | No description |
SMART | SM00717 | 1.6E-13 | 91 | 139 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.7E-14 | 92 | 136 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 18.672 | 92 | 141 | IPR017930 | Myb domain |
CDD | cd00167 | 7.97E-11 | 94 | 137 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.3E-22 | 94 | 140 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 442 aa Download sequence Send to blast |
MTTKDPSNDL TNPNPAEVGP TITAAPPPPP PSTRRGPRVR GPWSPEEDAI LTELVTKFGP 60 KNWGLIARGI PGRSGKSCRL RWCNQLDPCV MRKPFTEEED HIIISSHVIH GNKWAAIAKL 120 LPGRTDNAIK NHWNSTLRRR FDLGKSTTDA CIDRNKASSE DTVSGDDSLK TVSAYQPPVE 180 QCYQSAFRDP VSENRPQDVS VAVNECTPLS VYQAPVGENI NEYIQTPYPP PFIWVNPLVH 240 QYPHPFMTTY PPPVVTQPAE VRTEQPSLAR PVPRVGAFNI YRPPSTVPSA ALHPKPTPVQ 300 GAPDFGISKF LDGVQNEPII PSRCGSGCCA TPTGSESRTS LLGPEFVDYE ESPSFSWYEL 360 ASIATDLNNI AWIKSGLDSR STIKIETPDY RKQSQGSSGD SGQCSQHNNA RFEEGRSKLI 420 DMMTESIPRQ LVAFPAEVAG FS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 6e-40 | 39 | 142 | 6 | 109 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010690407.1 | 1e-169 | PREDICTED: uncharacterized protein LOC104903953 | ||||
TrEMBL | A0A0K9S3S0 | 1e-155 | A0A0K9S3S0_SPIOL; Uncharacterized protein | ||||
STRING | XP_010690407.1 | 1e-168 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G09230.1 | 3e-77 | myb domain protein 1 |