PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca30450.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family C3H
Protein Properties Length: 399aa    MW: 43588 Da    PI: 7.0428
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca30450.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.28.6e-114571127
                --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                ++++ C +++rtGtC y ++C+F+H+p
  Dca30450.1 45 PGEADCIYYLRTGTCGYASNCRFNHPP 71
                57899********************97 PP
2zf-CCCH34.92.5e-1194118327
                 S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                 +++C+f++rt  CkyG+ CkF H++
  Dca30450.1  94 EKPCSFYLRTQKCKYGAACKFDHPQ 118
                 689********************97 PP
3zf-CCCH39.68.4e-13237262227
                 -S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                 ++++Crff+ tG CkyG++CkF+H++
  Dca30450.1 237 DQPECRFFMSTGACKYGANCKFHHPK 262
                 689*********************96 PP
4zf-CCCH26.79.8e-09279303226
                 -S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                 ++  C +f  +G+CkyG++Ck++H+
  Dca30450.1 279 GEDVCGHFTSYGICKYGPTCKYNHP 303
                 6789********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.7E-54471IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.994472IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-74671IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-54870IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-45069IPR000571Zinc finger, CCCH-type
SMARTSM003569.6E-491118IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.0891119IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-593119IPR000571Zinc finger, CCCH-type
PfamPF006427.7E-994118IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.5E-595117IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.079235263IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-6235262IPR000571Zinc finger, CCCH-type
PfamPF006428.2E-11237262IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-6238263IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-5241260IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.4E-6276303IPR000571Zinc finger, CCCH-type
SMARTSM003562.4E-4277304IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.915277305IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-7279303IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.1E-4281302IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MPENRQNHKN VTPISSDLPL NDIKEGIEKM KIERKEEGEE YPSRPGEADC IYYLRTGTCG  60
YASNCRFNHP PLQPQSDQSK NELPQRDGQP DCGEKPCSFY LRTQKCKYGA ACKFDHPQPP  120
SVETALAVPP GAVAVGIGSS LPSTGIPYVG AGALPAWPWA RSSRVPGPQA YMPYFIPPLQ  180
GPVAAQNWNS YLGNMSSMAA PGVVGTTDLI YNPINSGEMI SGGQVDLSAI NLPERPDQPE  240
CRFFMSTGAC KYGANCKFHH PKARIAHSLG PHGLPLRPGE DVCGHFTSYG ICKYGPTCKY  300
NHPIAGYISS YYYGMPSIPY LNQPFIATQK NSAILNSAET SHQSKSSKIT DWIQKPEIVD  360
GKNRQHSATK PDQVALEKND DQPVSVSVAT DEIPRDQSD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010688921.11e-139PREDICTED: zinc finger CCCH domain-containing protein 3 isoform X2
TrEMBLD7TEE81e-113D7TEE8_VITVI; Uncharacterized protein
STRINGXP_010688919.11e-136(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.21e-64C3H family protein