PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca30161.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

G2-like

Protein Properties

Length: 381aa MW: 42849.3 Da PI: 7.3112

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca30161.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	108.4	3.7e-34	35	89	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wtp+LHerFveav+qLGG++kAtPkt+++lm+++gLtl+h+kSHLQkYRl Dca30161.1 35 KPRLKWTPDLHERFVEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRL 89 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.849	32	92	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.8E-32	33	90	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.3E-17	34	90	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.1E-23	35	90	IPR006447	Myb domain, plants
Pfam	PF00249	5.7E-10	37	88	IPR001005	SANT/Myb domain
Pfam	PF14379	3.3E-24	134	181	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 381 aa Download sequence Send to blast
MYQSPRTPAH SDRQLFLQGV SGPRDSNLVL STDAKPRLKW TPDLHERFVE AVNQLGGADK 60 ATPKTVMKLM GIPGLTLYHL KSHLQKYRLS KNIHGQANSG TNSKPVVTTS DRIPETSPQH 120 TSNINTMQPT NKNIHINEAL QMQIEVQRRL HEQLEVQRRL QLRIEAQGKY LQGVLEKAQE 180 TLGKQNIGAV GLEAAKHQLS ELVSKVSDQC LNLAFTEIVE EQQGVHPHHQ TQQTNMLTNC 240 STESCLTSCD GHVAHKREQE IPQNALGLRP YSGDTRFLDI QDLNDTTKDH AAALFPMMTQ 300 PDPEKLLFQV EKACNDLTMC VGIKRERPNN VEKSANSHRT TDTFQLDSQY KLASFSTDLD 360 LNTRHEPDGI RHLDLNGLSW A

Sequence ? help Back to Top

Protein Sequence Length: 381 aa Download sequence Send to blast

MYQSPRTPAH SDRQLFLQGV SGPRDSNLVL STDAKPRLKW TPDLHERFVE AVNQLGGADK  60
ATPKTVMKLM GIPGLTLYHL KSHLQKYRLS KNIHGQANSG TNSKPVVTTS DRIPETSPQH  120
TSNINTMQPT NKNIHINEAL QMQIEVQRRL HEQLEVQRRL QLRIEAQGKY LQGVLEKAQE  180
TLGKQNIGAV GLEAAKHQLS ELVSKVSDQC LNLAFTEIVE EQQGVHPHHQ TQQTNMLTNC  240
STESCLTSCD GHVAHKREQE IPQNALGLRP YSGDTRFLDI QDLNDTTKDH AAALFPMMTQ  300
PDPEKLLFQV EKACNDLTMC VGIKRERPNN VEKSANSHRT TDTFQLDSQY KLASFSTDLD  360
LNTRHEPDGI RHLDLNGLSW A

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-21	34	91	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-21	34	91	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-21	34	91	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-21	34	91	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-21	34	91	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-21	34	91	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-21	34	91	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-21	34	91	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269\|PubMed:21255164, ECO:0000305\|PubMed:15592750}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00331	DAP	Transfer from AT3G04030	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269\|PubMed:15592750}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021740906.1	0.0	myb-related protein 2-like isoform X3
Swissprot	Q9SQQ9	1e-109	PHL9_ARATH; Myb-related protein 2
TrEMBL	A0A0K9RQP5	1e-176	A0A0K9RQP5_SPIOL; Uncharacterized protein
STRING	XP_010672720.1	1e-175	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04030.3	1e-111	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis. Plant Sci., 2017. 263: p. 219-225 [PMID:28818378]