PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Dca3015.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
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Family | DBB | ||||||||
Protein Properties | Length: 333aa MW: 36110.1 Da PI: 6.1188 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 17.5 | 8.9e-06 | 4 | 47 | 5 | 42 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 C+ +e e++ C ++ lC+ C + H H++v+l Dca3015.1 4 QCNVCETAEATVLCCADEAALCDLCDRKVHAAnklaskHQRVSL 47 7******99*********************66789999998875 PP | |||||||
2 | zf-B_box | 28.4 | 3.4e-09 | 54 | 94 | 3 | 37 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 ++kC+ ++e +fC +++ llC++C ++H H Dca3015.1 54 MPKCDICQETVGYFFCLEDRALLCRKCDIAIHTAnsfvsaH 94 79********9*********************554555555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.627 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 5.54E-7 | 3 | 47 | No hit | No description |
SMART | SM00336 | 4.6E-8 | 4 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 8.802 | 52 | 99 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 2.6E-14 | 52 | 99 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.1E-6 | 54 | 93 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.26E-9 | 55 | 99 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009641 | Biological Process | shade avoidance | ||||
GO:0009658 | Biological Process | chloroplast organization | ||||
GO:0009718 | Biological Process | anthocyanin-containing compound biosynthetic process | ||||
GO:0010099 | Biological Process | regulation of photomorphogenesis | ||||
GO:0015995 | Biological Process | chlorophyll biosynthetic process | ||||
GO:0016607 | Cellular Component | nuclear speck | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 333 aa Download sequence Send to blast |
MKIQCNVCET AEATVLCCAD EAALCDLCDR KVHAANKLAS KHQRVSLSHS SSYMPKCDIC 60 QETVGYFFCL EDRALLCRKC DIAIHTANSF VSAHQRFLLT GVQVGLEATE PGSSSPGGNT 120 QSGEKGSDTD NRAAPKRTAP NPTVTQFDRA SSGQNGAHPA KATHSDERSI PMSMSVSEYA 180 KMQPPVQNGT LEDLTQSRMS FVGGSVTGNL SQWPIDEFLA MSDFPQSYGF TDNGSSKADS 240 GKLGSTDSSS ILRSLEDDID SDEQLGQVPD VSWAVLKIPS PPTASGLHWP KNSQLFMDNT 300 DNSVFVPDIS WSTAPNYHHY QPKHNAGKRR RQS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010675280.1 | 1e-149 | PREDICTED: B-box zinc finger protein 22 | ||||
TrEMBL | A0A0K9R0T5 | 1e-141 | A0A0K9R0T5_SPIOL; Uncharacterized protein | ||||
STRING | XP_010675280.1 | 1e-148 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78600.1 | 8e-77 | light-regulated zinc finger protein 1 |