PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Dca30122.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
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Family | Dof | ||||||||
Protein Properties | Length: 179aa MW: 19821.2 Da PI: 7.8757 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 125 | 2.4e-39 | 57 | 114 | 2 | 59 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknk 59 +ek+++cprC+s++tkfCy+nny+++qPr+fCk+C+ryWt+GGalrnvPvG+grrk+k Dca30122.1 57 PEKIIPCPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKSK 114 68999***************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-29 | 56 | 114 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 3.2E-32 | 59 | 114 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.425 | 61 | 115 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 63 | 99 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:1902455 | Biological Process | negative regulation of stem cell population maintenance | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 179 aa Download sequence Send to blast |
MGEIKLFGQK IVLQPKQEPI SEVDDNKIIE RERDDVNDNE NDDDDENKTS NHHHKRPEKI 60 IPCPRCKSME TKFCYFNNYN VNQPRHFCKG CQRYWTAGGA LRNVPVGAGR RKSKPLGVGV 120 GGGGGGVEYL ENSYFDGLNM SMGNFDLNGV VVDEWRLAAA VAAGGGGFGI KRRKSESTG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Transcriptional repressor of 'CONSTANS' expression (By similarity). Regulates a photoperiodic flowering response. {ECO:0000250, ECO:0000269|PubMed:19619493}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian-regulation. The transcript level rises progressively from dawn and decreases during the night. {ECO:0000269|PubMed:19619493}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021723746.1 | 2e-63 | dof zinc finger protein DOF1.5-like | ||||
Swissprot | O22967 | 4e-48 | CDF4_ARATH; Cyclic dof factor 4 | ||||
TrEMBL | A0A1U8K818 | 5e-52 | A0A1U8K818_GOSHI; dof zinc finger protein DOF1.5-like | ||||
TrEMBL | A0A2P5QSG8 | 5e-52 | A0A2P5QSG8_GOSBA; Uncharacterized protein | ||||
STRING | XP_010686204.1 | 1e-57 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G29160.1 | 4e-44 | Dof family protein |
Publications ? help Back to Top | |||
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