PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca30091.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

Dof

Protein Properties

Length: 373aa MW: 40669.3 Da PI: 8.0329

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca30091.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	120.5	6.2e-38	54	113	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +++al+cprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lr vPvGgg+rknk++ Dca30091.1 54 QQEALRCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRSVPVGGGCRKNKRV 113 68999*****************************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	5.1E-33	56	112	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	2.0E-26	57	112	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.143	58	112	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	60	96	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence Send to blast
MASVAAAPPP ARAAAAMDQK AAVAAFSPGF IQQQQSNQHS KQQQQEQNNG NGQQQEALRC 60 PRCDSSNTKF CYYNNYSLSQ PRHFCKACKR YWTRGGTLRS VPVGGGCRKN KRVRRHPNNN 120 NNNNSSTTNN TSSNNNINLR EGSVNSLPVV GSGHPIHDLM ISSPTNNNPL YYGSNNHNLM 180 NFPFSRYDLQ IPPPPPPQMN GFGLGFSSSG LVHNINGDEV NFRNLHNNNN NNNNNNNNNN 240 KQIFQDLIST TTTPPTISSF LASTFQMKGG GGGNNNFETI LPSYDEGSDG IYTKEEVVKT 300 EVEGQNGSSL DHDPQEWCGS SRNGHQMDHQ QQMGGSSPSC DPSLIWGSGP NLGAWLDPST 360 NNHLSSSSLT SLI

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence Send to blast

MASVAAAPPP ARAAAAMDQK AAVAAFSPGF IQQQQSNQHS KQQQQEQNNG NGQQQEALRC  60
PRCDSSNTKF CYYNNYSLSQ PRHFCKACKR YWTRGGTLRS VPVGGGCRKN KRVRRHPNNN  120
NNNNSSTTNN TSSNNNINLR EGSVNSLPVV GSGHPIHDLM ISSPTNNNPL YYGSNNHNLM  180
NFPFSRYDLQ IPPPPPPQMN GFGLGFSSSG LVHNINGDEV NFRNLHNNNN NNNNNNNNNN  240
KQIFQDLIST TTTPPTISSF LASTFQMKGG GGGNNNFETI LPSYDEGSDG IYTKEEVVKT  300
EVEGQNGSSL DHDPQEWCGS SRNGHQMDHQ QQMGGSSPSC DPSLIWGSGP NLGAWLDPST  360
NNHLSSSSLT SLI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021740622.1	6e-78	dof zinc finger protein DOF1.4-like
TrEMBL	A0A0K9RKK6	3e-66	A0A0K9RKK6_SPIOL; Uncharacterized protein
STRING	XP_010686431.1	1e-76	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28310.2	6e-33	Dof family protein