PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca29519.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family MYB
Protein Properties Length: 288aa    MW: 31270.8 Da    PI: 7.3488
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca29519.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.78.4e-111355444
                     S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     WT e d+ + +a++ +  +   +W++Ia+ ++ g+t +++k+++
       Dca29519.1 13 WTREQDKAFENAIATHTEDsddRWEKIAADVP-GKTMEEIKLHY 55
                     ********************************.**********9 PP
2Myb_DNA-binding43.95.6e-14122166347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++ +  ++G+g+W++I+r +  +Rt+ q+ s+ qky
       Dca29519.1 122 AWTEEEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKY 166
                      6*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512937.541863IPR017884SANT domain
SMARTSM007174.2E-10961IPR001005SANT/Myb domain
SuperFamilySSF466891.1E-101266IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.9E-61360IPR009057Homeodomain-like
PfamPF002496.4E-91355IPR001005SANT/Myb domain
CDDcd001678.90E-101359No hitNo description
PROSITE profilePS5129418.172114171IPR017930Myb domain
SuperFamilySSF466893.73E-17117172IPR009057Homeodomain-like
TIGRFAMsTIGR015572.6E-17119169IPR006447Myb domain, plants
SMARTSM007177.6E-11119169IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-11122165IPR009057Homeodomain-like
PfamPF002497.7E-12122166IPR001005SANT/Myb domain
CDDcd001672.15E-10122167No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MTVVEEKGDG CIWTREQDKA FENAIATHTE DSDDRWEKIA ADVPGKTMEE IKLHYEILLE  60
DITEIESGRV PLPSYSTSSE GSTSQAAEDG NGKKGQSGNA GEESNRGGKA SRADQERRKG  120
IAWTEEEHRL FLLGLDKYGK GDWRSISRNF VVTRTPTQVA SHAQKYFIRL NSMNKERRRS  180
SIHDITSVNG ADLSTTPGPI TGQTTNVSLS ESSVAKSNKQ AAQPSTATIG QPVVRPLAPA  240
IGTPVNLQAP PHMAYGVRVP VQGSVVPSAK MGMGHMPLTL PHSNSTHR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A5e-20778576RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00500DAPTransfer from AT5G08520Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010671196.11e-145PREDICTED: transcription factor DIVARICATA
RefseqXP_010671200.11e-145PREDICTED: transcription factor DIVARICATA
RefseqXP_010671206.11e-145PREDICTED: transcription factor DIVARICATA
RefseqXP_010671218.11e-145PREDICTED: transcription factor DIVARICATA
RefseqXP_010671224.11e-145PREDICTED: transcription factor DIVARICATA
RefseqXP_019103797.11e-145PREDICTED: transcription factor DIVARICATA
SwissprotQ9FNN61e-122SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A1S3VR161e-136A0A1S3VR16_VIGRR; transcription factor SRM1
STRINGXP_010671196.11e-145(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.11e-121MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]