PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Dca29406.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
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Family | NAC | ||||||||
Protein Properties | Length: 402aa MW: 44656.5 Da PI: 4.9523 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 172.8 | 1.1e-53 | 25 | 152 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 l+pGfrFhPtd+elv++yLk+k+ gk++++ ++i+e+diyk+ePwdLp +k+k++++ewyfF +d+ky +g+r nrat +gyWkatg+d+++l+ + Dca29406.1 25 LAPGFRFHPTDQELVSYYLKRKICGKPIRF-DAISETDIYKSEPWDLPglSKLKSRDNEWYFFGVQDRKYVNGSRVNRATGNGYWKATGNDRPILH-NL 121 579**************************9.99***************65599999****************************************.99 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 ++vg+kktLvfy+grap g++t+Wvmheyrl Dca29406.1 122 RTVGMKKTLVFYSGRAPCGKRTNWVMHEYRL 152 9****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.59E-62 | 16 | 175 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.856 | 25 | 175 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.8E-27 | 27 | 152 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 402 aa Download sequence Send to blast |
MAPPSTVVVA APPSSTAVAV TATSLAPGFR FHPTDQELVS YYLKRKICGK PIRFDAISET 60 DIYKSEPWDL PGLSKLKSRD NEWYFFGVQD RKYVNGSRVN RATGNGYWKA TGNDRPILHN 120 LRTVGMKKTL VFYSGRAPCG KRTNWVMHEY RLTDEDLAKS GVPMDAYLLC KILKKSGPGF 180 KPGEQYGPFV EEEWEKDESA LVPGEEGDDD MACNDDTRIE DSVQSINNSD PNPVTICGLS 240 MEVQEIPPLC KLERGDDGPV ACTVDPEPLS LGPNKRLRQS EPDSCLSNAS VISTMRTHGP 300 CSSSTGTTNF SCALLEFPLM EAGEPEERPS PPPANVIDIN VPPSYLKLFE DLRNEIYRTS 360 IEKESLKIEV MSARTMINIL QTKIDHLTKE NDDLKKSNLR DG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 6e-49 | 19 | 176 | 9 | 169 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor that binds to the motif 5'-(C/T)A(C/A)G-3' in the promoter of target genes (PubMed:25578968). Binds also to the 5'-CTTGNNNNNCAAG-3' consensus sequence in chromatin (PubMed:26617990). Can bind to the mitochondrial dysfunction motif (MDM) present in the upstream regions of mitochondrial dysfunction stimulon (MDS) genes involved in mitochondrial retrograde regulation (MRR) (PubMed:24045019). Together with NAC050 and JMJ14, regulates gene expression and flowering time by associating with the histone demethylase JMJ14, probably by the promotion of RNA-mediated gene silencing (PubMed:25578968, PubMed:26617990). Regulates siRNA-dependent post-transcriptional gene silencing (PTGS) through SGS3 expression modulation (PubMed:28207953). Required during pollen development (PubMed:19237690). {ECO:0000269|PubMed:19237690, ECO:0000269|PubMed:24045019, ECO:0000269|PubMed:25578968, ECO:0000269|PubMed:26617990, ECO:0000269|PubMed:28207953}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00612 | ChIP-seq | Transfer from AT3G10490 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by type III effector proteins (TTEs) secreted by the pathogenic bacteria P.syringae pv. tomato DC3000 during basal defense. {ECO:0000269|PubMed:16553893}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021722878.1 | 0.0 | NAC domain-containing protein 2-like | ||||
Swissprot | Q9SQY0 | 1e-108 | NAC52_ARATH; NAC domain containing protein 52 | ||||
TrEMBL | A0A0K9R5V8 | 0.0 | A0A0K9R5V8_SPIOL; Uncharacterized protein | ||||
STRING | XP_010694507.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10490.2 | 1e-102 | NAC domain containing protein 52 |
Publications ? help Back to Top | |||
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