PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca29301.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family MYB
Protein Properties Length: 747aa    MW: 85633 Da    PI: 8.4137
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca29301.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.29.4e-14385429246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g WT+eE+++l+ +++++G ++W+++a+++ ++Rt++qc  r+q 
       Dca29301.1 385 GHWTKEEEKKLLSLIEKYGFHSWRSVAEKLSTNRTPYQCLVRYQR 429
                      57****************************************996 PP
2Myb_DNA-binding46.58.5e-15437481146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      ++ WT++Ed +l  av+ +G ++W ++a+t+  gRt+ qc +rw k
       Dca29301.1 437 KKDWTEDEDAQLRSAVETFGEKNWQAVASTLE-GRTGTQCSNRWKK 481
                      578*****************************.***********98 PP
3Myb_DNA-binding38.52.6e-12491530243
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksr 43 
                      g+W+ +Ed++l  av+++G+  W++Ia+ ++ gRt  qc++r
       Dca29301.1 491 GKWSGDEDKRLRVAVTLFGKS-WHRIAHFVP-GRTQSQCRER 530
                      79*****************88.*********.********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007177.0E-4283380IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-8286302IPR009057Homeodomain-like
PROSITE profilePS500906.168349378IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.5E-8350388IPR009057Homeodomain-like
SuperFamilySSF466891.22E-16360428IPR009057Homeodomain-like
PROSITE profilePS5129412.528379431IPR017930Myb domain
SMARTSM007172.7E-11383433IPR001005SANT/Myb domain
CDDcd001678.13E-9387431No hitNo description
PfamPF139213.2E-14387448No hitNo description
Gene3DG3DSA:1.10.10.601.5E-16389439IPR009057Homeodomain-like
PROSITE profilePS5129420.675432487IPR017930Myb domain
SuperFamilySSF466891.21E-23435530IPR009057Homeodomain-like
SMARTSM007171.4E-13436485IPR001005SANT/Myb domain
CDDcd001671.22E-10440483No hitNo description
Gene3DG3DSA:1.10.10.603.4E-17440486IPR009057Homeodomain-like
PROSITE profilePS5129413.975489540IPR017930Myb domain
SMARTSM007174.3E-10489537IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-12489534IPR009057Homeodomain-like
PfamPF002491.9E-10491530IPR001005SANT/Myb domain
CDDcd001674.93E-8492536No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 747 aa     Download sequence    Send to blast
MTTPDYGGDS SESDCDDFLR QGIEYLSEAC LPNFNATAAA DDDDDDSDDV EFVRSIQQRY  60
GGHVADDIKP LASLPPPVSD DDDDYEIYRK IKEQFSQHCV ETSPTANAGA SADVPETKDG  120
GCRVNYESND FNDPVNGGSS MDEHLDGVQR DFNDIVDEED AIGSTSSFPR EAQTFIEAIK  180
KNRSCQKFIR NKLLHVESKM EEIKDIRKRL KTLRDFQVRC KKKIGRALSQ KQDARVQLIS  240
VHKQKSNAKG GDGNVSAICY GPQENSYVAC YKAALEKFPL SFHRDKWTEE DRRFLEKGIV  300
RQYQEKLLQQ SEAHVLSSAK KPDFANGVDA MMLSIKNHSI PPETIQSFLG EVNWEQLASI  360
YLPRRSGEEC ETRWLNYENR LINLGHWTKE EEKKLLSLIE KYGFHSWRSV AEKLSTNRTP  420
YQCLVRYQRS LNASILKKDW TEDEDAQLRS AVETFGEKNW QAVASTLEGR TGTQCSNRWK  480
KSLHPAREKV GKWSGDEDKR LRVAVTLFGK SWHRIAHFVP GRTQSQCRER RWKTLFPDEV  540
PRIKANRYIQ KVALISNFVD REDQRPTLGP KDFVALPIEG LINEQGKAKG TKKRKRNRKC  600
KEKESSEKIS SSCSLRRSKR RKSVRALDNK LTEDSAEESN HEVTLSFYKK MTSKKGSKTK  660
KCKTTAELED NSCTVNELEI SDVGTQTHST DAAYSKQKND RKKCKRSKVD TDQSEEWELP  720
LSVLFKKASN VLAEHQLYCW KWKNDFR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C1e-253505381155MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-253505381155MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021858427.10.0uncharacterized protein LOC110797633
RefseqXP_021858428.10.0uncharacterized protein LOC110797633
RefseqXP_021858429.10.0uncharacterized protein LOC110797633
RefseqXP_021858430.10.0uncharacterized protein LOC110797633
TrEMBLA0A0K9R9D00.0A0A0K9R9D0_SPIOL; Uncharacterized protein (Fragment)
STRINGXP_010674389.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18100.21e-117myb domain protein 4r1