PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca29200.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family TCP
Protein Properties Length: 529aa    MW: 56102.1 Da    PI: 8.91
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca29200.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP128.28.6e-40952532132
         TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.................ssssasec.......... 73 
                  g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWL+++a  +i el+++                 +++++s+c          
  Dca29200.1  95 SGGKDRHSKVWTAKGPRDRRVRLSVNTAIQFYDLQDRLGYDQPSKAVEWLIKAAADSINELPSLsninfppdtprsggninNNNNNSNCviesggaell 193
                 689****************************************************************99999999999887555556778875544432 PP

         TCP  74 eaesssssasnsssg......kaaksaa.kskksqksaasalnlak.esrakarararertrekmri 132
                 +       +++++++       +++++  +s++s++s+ s l+l++ e r kar+rarert++++  
  Dca29200.1 194 Q-------QDQQQQQlqqvgsMSMSKSGcSSNNSETSKGSGLSLSRsEIRVKARERARERTAKEKDE 253
                 2.......222222233455555555555999999999999*****999**********99887654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF820517.85E-532129IPR006169GTP1/OBG domain
PfamPF036341.9E-4196252IPR005333Transcription factor, TCP
PROSITE profilePS5136932.01197155IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137010.138233251IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:1903508Biological Processpositive regulation of nucleic acid-templated transcription
GO:2000306Biological Processpositive regulation of photomorphogenesis
GO:0005525Molecular FunctionGTP binding
Sequence ? help Back to Top
Protein Sequence    Length: 529 aa     Download sequence    Send to blast
MEVDDFPSSK YSKLNSNNNA KQRLQPSKIG FITTGTGDGG GGTTTTATAT TTAAMAAALN  60
GGGGGGGGGD VLGASTRFGR QWQHSSRIIR VSRASGGKDR HSKVWTAKGP RDRRVRLSVN  120
TAIQFYDLQD RLGYDQPSKA VEWLIKAAAD SINELPSLSN INFPPDTPRS GGNINNNNNN  180
SNCVIESGGA ELLQQDQQQQ QLQQVGSMSM SKSGCSSNNS ETSKGSGLSL SRSEIRVKAR  240
ERARERTAKE KDENLSSAAR VTVAAAAAAA HNDNVSSMGQ TSSFTQLLTA GINNLKDCTP  300
TPSPHSSEQR AGRNMAVFCD TTTTTTPPMV DYCGTTTTGF MGLSSTHSHL GNGPLPHVMT  360
LLPYSGSHEI QHQHQHQHQH QHQQLPFFLD HHHPLIQIPN NHNNTPNNAA TGGGGGGGGG  420
GGGDYNLNFS ISSASTTSGF NRGTLQSNSS SSPSFLSYLQ RFSATDGGGG SSVPFFLGGA  480
PISPIVDNQH YHHHHHHDNH QQQYNSGGLH LNYGEGPPRH SDDKGKGKH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A6e-24102156155Putative transcription factor PCF6
5zkt_B6e-24102156155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00006PBMTransfer from 493022Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021737267.11e-125transcription factor TCP2-like
RefseqXP_021737323.11e-125transcription factor TCP2-like
RefseqXP_021737377.11e-125transcription factor TCP2-like
RefseqXP_021737443.11e-125transcription factor TCP2-like
RefseqXP_021737495.11e-125transcription factor TCP2-like
RefseqXP_021737536.11e-125transcription factor TCP2-like
RefseqXP_021737579.11e-125transcription factor TCP2-like
TrEMBLA0A0K9RLZ61e-115A0A0K9RLZ6_SPIOL; Uncharacterized protein
STRINGXP_010687111.11e-112(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.22e-43TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2