PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca2917.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family Whirly
Protein Properties Length: 196aa    MW: 21689.7 Da    PI: 10.4901
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca2917.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly168.91.2e-52531901138
     Whirly   1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalkvePlp 100
                s+yk+kaal+v++  p+f + ++gnl +kr+G +ll + +a +erkydWe+kq+fal +tev+++++la+++sc+ffhdp++++s +G+vrk+l+++  +
  Dca2917.1  53 SLYKGKAALSVEPLPPKFIKNETGNLYVKRTGYILLSFSPAKGERKYDWERKQNFALNPTEVGSFISLAPNGSCDFFHDPGMQTSTAGQVRKTLQIRGNS 152
                68************************************************************************************************** PP

     Whirly 101 dGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsll 138
                dG+G+f++lsv  ++ k ne+f+v v+ aefav+r  +
  Dca2917.1 153 DGTGFFLSLSVVDNVKKINERFTVSVTPAEFAVMRASF 190
                **********************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.102.7E-5345190IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544473.77E-4746191IPR009044ssDNA-binding transcriptional regulator
PfamPF085363.8E-5154187IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MMKLSNVFKS RGSTLGQLLK RNDGFQDAFK GYATFSTVGQ TPSTGGRIHA AYSLYKGKAA  60
LSVEPLPPKF IKNETGNLYV KRTGYILLSF SPAKGERKYD WERKQNFALN PTEVGSFISL  120
APNGSCDFFH DPGMQTSTAG QVRKTLQIRG NSDGTGFFLS LSVVDNVKKI NERFTVSVTP  180
AEFAVMRASF TVRYRD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4kop_A5e-58461919154Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_B5e-58461919154Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_C5e-58461919154Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_D5e-58461919154Single-stranded DNA-binding protein WHY2, mitochondrial
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtSingle-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269|PubMed:21911368}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010677192.11e-83PREDICTED: single-stranded DNA-bindig protein WHY2, mitochondrial
RefseqXP_021775303.11e-83single-stranded DNA-bindig protein WHY2, mitochondrial-like
RefseqXP_021775313.11e-83single-stranded DNA-bindig protein WHY2, mitochondrial-like
SwissprotD9J0346e-59WHY2_SOLTU; Single-stranded DNA-binding protein WHY2, mitochondrial
TrEMBLA0A0K9QDK63e-77A0A0K9QDK6_SPIOL; Uncharacterized protein
STRINGXP_010677192.15e-83(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.16e-60WHIRLY 2