PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca2902.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family ERF
Protein Properties Length: 298aa    MW: 32629.4 Da    PI: 5.3687
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca2902.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.91.6e-20134183255
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a++ a+ kl+g
  Dca2902.1 134 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDTAAYKLRG 183
                59******9.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.10E-33133191No hitNo description
Gene3DG3DSA:3.30.730.102.0E-32134192IPR001471AP2/ERF domain
SMARTSM003802.1E-37134197IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-23134191IPR016177DNA-binding domain
PROSITE profilePS5103223.499134191IPR001471AP2/ERF domain
PfamPF008476.4E-14135183IPR001471AP2/ERF domain
PRINTSPR003672.6E-11135146IPR001471AP2/ERF domain
PRINTSPR003672.6E-11157173IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MATTMDMFFS NNTNNSTNLS YFSGGCCGNE LMEALSPFIK PPTFNDGCFN EQAHFFGLTH  60
LSPSPIPNPS PISPFQDQFT YPSQSPISGP NTYSFPPPLP CYYGSEDKNF PVAMKNPSMG  120
PGQVLAQAQR PGKLYRGVRQ RHWGKWVAEI RLPKNRTRLW LGTFDTAEEA ALAYDTAAYK  180
LRGDGARLNF PSLRHNGGAG LGEYKPLQAS VDAKLDAICQ NMAAQQSNNS TAKPRKSKKS  240
STTPAVSSTM ESESGSSGGS SPLSELTFEE EEEMVGESYL LETCPSHEID WDAIMSYN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-22132198369ATERF1
3gcc_A2e-22132198369ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021740115.14e-85ethylene-responsive transcription factor RAP2-4-like, partial
SwissprotQ8H1E44e-68RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4
TrEMBLA0A088FRQ73e-88A0A088FRQ7_SUASA; DREBb
STRINGXP_010676915.17e-76(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22190.13e-43ERF family protein
Publications ? help Back to Top
  1. Pati A,Vasquez-Robinet C,Heath LS,Grene R,Murali TM
    XcisClique: analysis of regulatory bicliques.
    BMC Bioinformatics, 2006. 7: p. 218
    [PMID:16630346]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Iwase A, et al.
    WIND1-based acquisition of regeneration competency in Arabidopsis and rapeseed.
    J. Plant Res., 2015. 128(3): p. 389-97
    [PMID:25810222]
  4. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]
  5. Iwase A, et al.
    WIND1 Promotes Shoot Regeneration through Transcriptional Activation of ENHANCER OF SHOOT REGENERATION1 in Arabidopsis.
    Plant Cell, 2017. 29(1): p. 54-69
    [PMID:28011694]