PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca28850.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family B3
Protein Properties Length: 814aa    MW: 89823.4 Da    PI: 6.3937
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca28850.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.21.5e-18317417199
                 EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                 f+kvl+ sd+++ grlvlpk +ae++   ++ +e+  ++++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+++F++++  e++lv++
  Dca28850.1 317 FEKVLSASDAGRIGRLVLPKACAEAYfpPISRPEGLPIKIQDVKGNEWMFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTITFSRKD-PEGKLVMG 413
                 99**************************555556677***************9989999999***9.********************654.88888888 PP

                 EE-S CS
          B3  96 vfrk 99 
                 ++++
  Dca28850.1 414 FRKA 417
                 8765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.84E-20314417IPR015300DNA-binding pseudobarrel domain
CDDcd100172.05E-23315416No hitNo description
Gene3DG3DSA:2.40.330.106.8E-29315420IPR015300DNA-binding pseudobarrel domain
PfamPF023624.2E-16317417IPR003340B3 DNA binding domain
PROSITE profilePS5086311.082317418IPR003340B3 DNA binding domain
SMARTSM010199.5E-23317418IPR003340B3 DNA binding domain
PROSITE profilePS5105013.518556606IPR011124Zinc finger, CW-type
PfamPF074965.1E-10561603IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 814 aa     Download sequence    Send to blast
MTMRCMNKKC GTTSSSEWKT GWSLRSGEFA HLCLKCWFAF NQNVYCEEFH TDESGWRKCD  60
TCGKRLHCGC IVSVSFIELL DDGGVKCIDC ARNSDPNSSS DGGNKSTAYG LCTMRENNLV  120
VEKHEDRHGR SPLSIPQTVN AKLGLGLPKQ ENLIFPTSET GATTPSPPPF SMDTSTWRSN  180
LGQTSMGSFM KDRLRDVSSN NMQSLDHNES AAHPNLNMSL GNLSGNLQFS SGTVVDEREQ  240
RTVPSVFNQG FMSTPPKLSF TPPADADMSM MPQLRLARPP GEGRGRHQLL PRYWPRITDQ  300
ELQQISGDSK CTIIPLFEKV LSASDAGRIG RLVLPKACAE AYFPPISRPE GLPIKIQDVK  360
GNEWMFQFRF WPNNNSRMYV LEGVTPCIQS MQLQAGDTIT FSRKDPEGKL VMGFRKASNS  420
SALNLPVAAN SCSGFPTGAH MNDLSSKQLD SVVGNFNLQN SDKIGEPTTE EGFLASSTPM  480
TTERKKGRNI GAKSKRLLID NQDAQALRLT WDEVQGLLRP PLNVKPSVVV IEDFEFEEYE  540
EPPVFGKSSV FATRLPGVIE QWAQCDSCSK WRRLPADYLL PPKWTCNDNA WDPIRCFCTA  600
PDELSPMELE VLLNLNKDST KKRMTMGNKG SQEQESCGLS ALANAAVMGD NPYEPGTSAI  660
VATTTKHPRH RAGCSCIVCI QPPSGKGKHN SSCTCTVCMT VKRRFKTLMM RKKKRQSDQE  720
AQLICQVKNS VKDDDNVECQ NVTADLGDTS SGLDLNCHPE LDDQVNGPSG STPEEETEGQ  780
CVEEQTVTPV VQEQIHTTDA SSDPENTKKT ANSP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A2e-662954202127B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1701712KRRFKTLMMRKK
2701714KRRFKTLMMRKKKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021723269.10.0B3 domain-containing transcription repressor VAL2-like
TrEMBLA0A0K9Q8H60.0A0A0K9Q8H6_SPIOL; Uncharacterized protein
STRINGXP_010683488.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30470.10.0high-level expression of sugar-inducible gene 2