PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca28590.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family bHLH
Protein Properties Length: 553aa    MW: 62584.7 Da    PI: 8.5281
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca28590.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.45.5e-13369413554
                 HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 h + ErrRR++iN++f+ Lr+llP+      +K +Ka++L+ + eY+  L
  Dca28590.1 369 HMISERRRREKINESFQALRSLLPQG-----TKKDKASVLRTTKEYLAAL 413
                 8899********************97.....7**************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000836.37E-13362418No hitNo description
SuperFamilySSF474596.41E-17364432IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.955364413IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-15366432IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-10369413IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.7E-14370419IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 553 aa     Download sequence    Send to blast
MDSVFRLSNG DRVSYLLKLM HSFNCSYVCL WTYSPDINFL YCEEGHFNEE VAAAAQVASV  60
ASSSSGMTLA RKLFEDYRQL VFAVGNQSVV PGLAFRNRNP YLELQEFDLQ RLASTDVQRH  120
FYLEARIKMA VFLGCSRGEI ELGMSYISQN METKIRSIFP QEFGGLQSTQ PMDVPRLIIE  180
QNPPSSSSSQ SMDSPEYPQL FYTYPSNTTT TTTTSTKFIQ EQIKETLPTI QQSTTTTNTN  240
TQTIHQIMPT IPNQFDNIVP FPTPEGTDAA LTRAYLAILS STTSTPPSTN GAQQSSVSPY  300
VEHHVSHRPS AFKSYNIGSL GVSVNTRPNL RRQNLLKRAI LFYRELNYRR VQDQVSVLGS  360
RPSSTQLHHM ISERRRREKI NESFQALRSL LPQGTKKDKA SVLRTTKEYL AALKSQLSEL  420
NTRNKVLEQQ LGTKKKTTTT TQVLASSNER LHVEIIPVQE STSRERLVDM SVRLRAGYSS  480
VEDLIMRLLE FLKQVNEVRL VSMEAQTSEE EVAQNVDHNS MDVVNIRLKI QGNDWDESAF  540
TEAVRRILAN LGQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1372377ERRRRE
2373378RRRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019102724.11e-176PREDICTED: putative transcription factor bHLH041
STRINGXP_010696570.11e-149(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.13e-53bHLH family protein