PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca28114.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

G2-like

Protein Properties

Length: 458aa MW: 50473 Da PI: 5.8502

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca28114.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	99.5	2.4e-31	232	286	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +pr+rWtpeLHe Fv+av++L G+ekAtPk +l+lm+v+g+t++hvkSHLQkYR+ Dca28114.1 232 RPRMRWTPELHELFVDAVNKLDGAEKATPKGVLKLMNVEGVTIYHVKSHLQKYRV 286 59****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.668	229	289	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.5E-29	230	287	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.58E-17	231	286	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.9E-23	233	286	IPR006447	Myb domain, plants
Pfam	PF00249	4.5E-8	234	285	IPR001005	SANT/Myb domain
Pfam	PF14379	5.5E-23	325	370	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 458 aa Download sequence Send to blast
MNNIGRTSLI THESRKGTTV VQTSLPPAGL SYVDKCQSPV FKKSSYPSTF KKSEKSEVSN 60 EAAPSHASMF CTNLYLSSSS SSEAQRQFGK HPFLPTPSTP STSSVQSTKP ELLVQDDSDS 120 LYEQRQSEDS FRDFLNYPGN SSDGDYDDVT CGSDSFALNE QLELQLLSDE LHFAMTDGGE 180 NPGIDEIYEV SPIASKPAEA AAVHDTAKSV SLPTSVNAVS SQKVPVNSAT HRPRMRWTPE 240 LHELFVDAVN KLDGAEKATP KGVLKLMNVE GVTIYHVKSH LQKYRVAKYI PEKKEEKKTS 300 SSEEKKSQLN SKLCDASHAS SKGSITEALR MQMEVQKQLH EQLEVQRQLQ MRIEEHARYL 360 QKILEEQQKT RCTLVSTQSL QSTTSGEQEH DPHPASPPSP ESPAKPVESK TDSSSSLPLK 420 HQTDSHDSLE LQPCQKKPCV ELNPSASSDA YAVDVDST

Sequence ? help Back to Top

Protein Sequence Length: 458 aa Download sequence Send to blast

MNNIGRTSLI THESRKGTTV VQTSLPPAGL SYVDKCQSPV FKKSSYPSTF KKSEKSEVSN  60
EAAPSHASMF CTNLYLSSSS SSEAQRQFGK HPFLPTPSTP STSSVQSTKP ELLVQDDSDS  120
LYEQRQSEDS FRDFLNYPGN SSDGDYDDVT CGSDSFALNE QLELQLLSDE LHFAMTDGGE  180
NPGIDEIYEV SPIASKPAEA AAVHDTAKSV SLPTSVNAVS SQKVPVNSAT HRPRMRWTPE  240
LHELFVDAVN KLDGAEKATP KGVLKLMNVE GVTIYHVKSH LQKYRVAKYI PEKKEEKKTS  300
SSEEKKSQLN SKLCDASHAS SKGSITEALR MQMEVQKQLH EQLEVQRQLQ MRIEEHARYL  360
QKILEEQQKT RCTLVSTQSL QSTTSGEQEH DPHPASPPSP ESPAKPVESK TDSSSSLPLK  420
HQTDSHDSLE LQPCQKKPCV ELNPSASSDA YAVDVDST

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-25	232	289	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-25	232	289	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-25	232	289	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-25	232	289	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-25	232	289	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-25	232	289	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-25	232	289	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-25	232	289	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00354	DAP	Transfer from AT3G13040	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010696145.1	1e-170	PREDICTED: myb family transcription factor PHL6
Swissprot	Q949U2	1e-105	PHL6_ARATH; Myb family transcription factor PHL6
TrEMBL	A0A0K9QTS5	1e-166	A0A0K9QTS5_SPIOL; Uncharacterized protein
STRING	XP_010696145.1	1e-169	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13040.2	2e-76	G2-like family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nguyen HT, et al. A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2. Plant Cell Physiol., 2016. 57(4): p. 784-97 [PMID:26872838]