PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca27595.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family C3H
Protein Properties Length: 484aa    MW: 52596.9 Da    PI: 6.0662
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca27595.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.63.4e-06431455327
                 S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                 +++C+ff     C+yG++C+F H+p
  Dca27595.1 431 QKPCKFFNSPKGCRYGSSCPFEHVP 455
                 579******************9975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.347428456IPR000571Zinc finger, CCCH-type
SMARTSM003560.0087429455IPR000571Zinc finger, CCCH-type
PfamPF006428.4E-5431454IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-4432453IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-6433459IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MNKVLSKDRL KRVKWASDDS LCQVKLFLSE DCPSQIGNDA EDHLQIKASL QSNGMNVDDL  60
PPGFGGKGPS YTQNQVCIPQ IRWSRPPVFK LDADWHVVAG EESEERGTQN HREMRVLEAL  120
YPRASAIPPS PSISPELKAS RYDDSQTPII PLNSIEDEDP LPTESTPCSN SSSGAVSNVP  180
IESKTTANDK LHAIIPGLDA DVIAAASAAY AASLKNNNEM GNMVDTELLI RILNEPKMIE  240
ALTKGSPPLP LVTSQAFHAP MTSRPITEPC TITSFDRTNE NIKPFLTFPT PYSDASSNTS  300
SSLQAMLSKL GDSLKPGNEN GVHLGSNASS NTMPFLNSAM FGSNASSPNV GPSHMLTSSS  360
QFSAPQPDRF PVPSVRTPAT KDLNYYKSLI RLHGTGGEDA TPEQFLPPQY QVSLPEATTT  420
SVQGQTRPKS QKPCKFFNSP KGCRYGSSCP FEHVPLLDLR PGNYADNDRS NKRLKISSDS  480
YEKC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-