PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca27554.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family bHLH
Protein Properties Length: 355aa    MW: 39211.6 Da    PI: 5.0639
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca27554.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.71.2e-14107158155
                 CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +r++h ++Er+RR+++N+ ++ +r+l+P++   + ++ + a+i+  A++Y+k+L+
  Dca27554.1 107 QRMTHIAVERNRRRQMNDYLASIRSLMPSS---YVQRGDQASIVAGAINYVKELE 158
                 79****************************...9******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.62E-17105178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.19E-14105162No hitNo description
PROSITE profilePS5088815.345106157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.9E-12107158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.4E-14107173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-9112163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516718.711277355IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MDYYYDLGNY SSIYTNDCGI FDVINSDNTT ISNQEILVDD VNQWAHDTQA QQQCNNNNNN  60
NYSLFCEYSS PEEAPPPSVV ANTVAEGGAR RKRRRRSSKN KEEVEQQRMT HIAVERNRRR  120
QMNDYLASIR SLMPSSYVQR GDQASIVAGA INYVKELEQL LQSMEAQKKS TKPHYHLQEE  180
SQSTLSPPDE KQCGNTVDNN VATNSSPNQP PALTPTPTPA PAPTLPPPVF AEFFSFPQYS  240
TSSTGLVSQQ QSVGSNSVSS NSGVGEIEVT MVESHANVKI LAKKQPKQLL KLIAGFQGLR  300
LNVLHLNVTT SLDSFVLYSL SLKVEEGCQL NSVDDIAAAA NHILAQIQEE AVVIL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18995RRKRRRR
29094RKRRR
39096RKRRRRS
4107118RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010675612.11e-110PREDICTED: transcription factor bHLH94
SwissprotQ9C7T47e-77BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A0K9QUW71e-105A0A0K9QUW7_SPIOL; Uncharacterized protein
STRINGXP_010675612.11e-110(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.11e-58bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]