PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca27470.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

MYB

Protein Properties

Length: 479aa MW: 52713.1 Da PI: 6.9063

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca27470.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.3	1.3e-16	43	88	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+W++eEd l ++v+++G ++W Iar ++ gR++k+c++rw + Dca27470.1 43 RGPWSPEEDVVLSELVAKFGARNWGMIARGIP-GRSGKSCRLRWCNQ 88 89****************************.*********985 PP
2	Myb_DNA-binding	58.1	2.1e-18	95	139	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r+++++eEd++l++a++ +G++ W+ Ia+ ++ gRt++ +k++w++ Dca27470.1 95 RKPFSEEEDLILIKAHAIHGNK-WAVIAKLLP-GRTDNAIKNHWNST 139 789*****************.*****.*********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	19.821	38	89	IPR017930	Myb domain
SuperFamily	SSF46689	2.34E-30	41	136	IPR009057	Homeodomain-like
SMART	SM00717	6.2E-14	42	91	IPR001005	SANT/Myb domain
Pfam	PF00249	2.8E-15	43	88	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	7.4E-24	44	96	IPR009057	Homeodomain-like
CDD	cd00167	2.40E-13	45	87	No hit	No description
PROSITE profile	PS51294	25.935	90	144	IPR017930	Myb domain
SMART	SM00717	3.2E-18	94	142	IPR001005	SANT/Myb domain
Pfam	PF00249	1.3E-16	95	139	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	9.7E-24	97	143	IPR009057	Homeodomain-like
CDD	cd00167	7.64E-14	97	140	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009651	Biological Process	response to salt stress
GO:0009723	Biological Process	response to ethylene
GO:0009733	Biological Process	response to auxin
GO:0009737	Biological Process	response to abscisic acid
GO:0009739	Biological Process	response to gibberellin
GO:0009751	Biological Process	response to salicylic acid
GO:0009753	Biological Process	response to jasmonic acid
GO:0005634	Cellular Component	nucleus
GO:0005737	Cellular Component	cytoplasm
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 479 aa Download sequence Send to blast
MERENNDQTM TTEDPNDSTS PTAETTADGG GKTSSAAKKT RVRGPWSPEE DVVLSELVAK 60 FGARNWGMIA RGIPGRSGKS CRLRWCNQLD PCLKRKPFSE EEDLILIKAH AIHGNKWAVI 120 AKLLPGRTDN AIKNHWNSTL RRRYDLSKFT GDFSIDKNKA SSEDTISDDT NPSKAHDGAQ 180 TLTTAEQQCH QSAYKAPQVT ESRHDENTVI PQCQPSSKRK QDSNNREDVT MVDSSNHQSG 240 YKDHISDNMS SFIQAPYTAP LIWVNHPVPP YPSFVPHYPP PVVTQPVEAP EPSLSRPLPR 300 VGAFNIYRPP SSPPSSAPLP KPVPVEGPLV NAFSPDFGIS KFLNEAENEP IIPSRCGHGC 360 CATPEGCKPS SSLLGPEFVD YEKPPSFFCH ELASIATDLN NIAWIKSGLD SSSAKRLEIQ 420 IPDHRREPHG ISLGIGDSGQ CTRFEEGRSK LMGMMTEAMS TQMHRRQTVT LPAEVKGLS

Sequence ? help Back to Top

Protein Sequence Length: 479 aa Download sequence Send to blast

MERENNDQTM TTEDPNDSTS PTAETTADGG GKTSSAAKKT RVRGPWSPEE DVVLSELVAK  60
FGARNWGMIA RGIPGRSGKS CRLRWCNQLD PCLKRKPFSE EEDLILIKAH AIHGNKWAVI  120
AKLLPGRTDN AIKNHWNSTL RRRYDLSKFT GDFSIDKNKA SSEDTISDDT NPSKAHDGAQ  180
TLTTAEQQCH QSAYKAPQVT ESRHDENTVI PQCQPSSKRK QDSNNREDVT MVDSSNHQSG  240
YKDHISDNMS SFIQAPYTAP LIWVNHPVPP YPSFVPHYPP PVVTQPVEAP EPSLSRPLPR  300
VGAFNIYRPP SSPPSSAPLP KPVPVEGPLV NAFSPDFGIS KFLNEAENEP IIPSRCGHGC  360
CATPEGCKPS SSLLGPEFVD YEKPPSFFCH ELASIATDLN NIAWIKSGLD SSSAKRLEIQ  420
IPDHRREPHG ISLGIGDSGQ CTRFEEGRSK LMGMMTEAMS TQMHRRQTVT LPAEVKGLS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	9e-38	42	145	6	109	B-MYB
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Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Slightly induced by salicylic acid. {ECO:0000269\|PubMed:16463103}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010690407.1	1e-177	PREDICTED: uncharacterized protein LOC104903953
Swissprot	Q42575	6e-56	MYB1_ARATH; Transcription factor MYB1
TrEMBL	A0A0K9S3S0	1e-170	A0A0K9S3S0_SPIOL; Uncharacterized protein
STRING	XP_010690407.1	1e-176	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55730.1	2e-59	myb domain protein 109

Publications ? help Back to Top
Wang T, et al. Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1027-41 [PMID:26243618] Nguyen HT, et al. A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2. Plant Cell Physiol., 2016. 57(4): p. 784-97 [PMID:26872838] Sanz-Fernández M, et al. Screening Arabidopsis mutants in genes useful for phytoremediation. J. Hazard. Mater., 2017. 335: p. 143-151 [PMID:28441590] Verma N,Burma PK Regulation of tapetum-specific A9 promoter by transcription factors AtMYB80, AtMYB1 and AtMYB4 in Arabidopsis thaliana and Nicotiana tabacum. Plant J., 2017. 92(3): p. 481-494 [PMID:28849604]