PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca27305.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

bHLH

Protein Properties

Length: 495aa MW: 53130.8 Da PI: 6.8508

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca27305.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	18	5.2e-06	332	368	3	32
HHHHHHHHHHHHHHHHHHHHHHCTSCCC......... CS HLH 3 rahnerErrRRdriNsafeeLrellPkas.......k 32 +h+ +Er RR++i +++ L++l+P +s + Dca27305.1 332 NSHSLAERVRREKISERMKFLQDLVPGCSkflsmklA 368 58************************98756665551 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.44E-7	327	364	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.12E-5	327	370	No hit	No description
PROSITE profile	PS50888	10.715	329	390	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.1E-7	333	361	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 495 aa Download sequence Send to blast
MDMSDKSNSE LETRNEVPSS YNAPGMSGDW RFNNGNFASS SMGIVSTGNA MGGCGAGVSD 60 SSPSGVMVDS FGQTVWEHPV NPASLGFGEM NAHTGEVGAS DPLSMLKSGM FVPNMSGMLA 120 PSLSQFPADS AFIERAARFS SFSGGHFGEL LNPFGLHQSV SPYHQGGTAM HGPQELSSGN 180 TMKNLPYRQP QKRDANVIET SKDVSVPSEH GVVERGSTTS GAKQRVSRSG NDSDEPVQSA 240 GGTREDASVS PAKSLGANKR KRINQDTEFE QANGTRQNSG ETRKKSSEIQ RKEEQNPASA 300 GNKSNGKQSS QSSDPPKDEY IHVRARRGQA TNSHSLAERV RREKISERMK FLQDLVPGCS 360 KFLSMKLATV NPRLDFNIEQ LLAKDHMLSA RSGPSAIGMS SSMPMPYPPL HPSQSPILQP 420 GPPGTGNFSE ILRRTINAQL ANMGGGFKEP THQFPNAWED ELHNVVQMGG FNASPPPDNP 480 EPNCPADERP MKADP

Sequence ? help Back to Top

Protein Sequence Length: 495 aa Download sequence Send to blast

MDMSDKSNSE LETRNEVPSS YNAPGMSGDW RFNNGNFASS SMGIVSTGNA MGGCGAGVSD  60
SSPSGVMVDS FGQTVWEHPV NPASLGFGEM NAHTGEVGAS DPLSMLKSGM FVPNMSGMLA  120
PSLSQFPADS AFIERAARFS SFSGGHFGEL LNPFGLHQSV SPYHQGGTAM HGPQELSSGN  180
TMKNLPYRQP QKRDANVIET SKDVSVPSEH GVVERGSTTS GAKQRVSRSG NDSDEPVQSA  240
GGTREDASVS PAKSLGANKR KRINQDTEFE QANGTRQNSG ETRKKSSEIQ RKEEQNPASA  300
GNKSNGKQSS QSSDPPKDEY IHVRARRGQA TNSHSLAERV RREKISERMK FLQDLVPGCS  360
KFLSMKLATV NPRLDFNIEQ LLAKDHMLSA RSGPSAIGMS SSMPMPYPPL HPSQSPILQP  420
GPPGTGNFSE ILRRTINAQL ANMGGGFKEP THQFPNAWED ELHNVVQMGG FNASPPPDNP  480
EPNCPADERP MKADP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021755999.1	0.0	transcription factor bHLH49-like isoform X1
Refseq	XP_021756007.1	0.0	transcription factor bHLH49-like isoform X1
Refseq	XP_021756016.1	0.0	transcription factor bHLH49-like isoform X1
TrEMBL	A0A0K9R4Y3	0.0	A0A0K9R4Y3_SPIOL; Uncharacterized protein
STRING	XP_010681176.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.3	2e-80	bHLH family protein