PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca27035.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family C3H
Protein Properties Length: 325aa    MW: 36725.7 Da    PI: 4.5282
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca27035.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.43.9e-064366226
                -S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                k  lC ff + G+C  G +CkF+H+
  Dca27035.1 43 KSILCEFFKA-GQCTKGFKCKFSHD 66
                6679**7777.*************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003566.1E-54167IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.3944168IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-64166IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-44367IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.498112150IPR000571Zinc finger, CCCH-type
SMARTSM003562.9112149IPR000571Zinc finger, CCCH-type
PfamPF165436.9E-17169252IPR032378ZC3H15/TMA46 family, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MSISAMLRWQ KKKEEEKARE KELNDLFKIA VTQPKVPIGV DPKSILCEFF KAGQCTKGFK  60
CKFSHDLNVQ RKGEKINIYS DKRDDEGTME DWDQEMLEKA IAEKSKEYQQ NKPTEIVCKH  120
FLDAVEKKQY GWFWVCPNGG KNCHYRHALP PGYILKSQMK ALLEEESEKM AIEDEIEDQR  180
SKVKGSTPMT PELFAQWKKK KLDEKAASVA SQTAERAKND RLSGRELFMS DASLFVDHAE  240
AWDNYERDES QENEAQANEK PGGADGSSSS SHVNPDAPSS SGTANGDDDD IPDDIDDDLD  300
DDELEELEAS LSRTSIQINE PSSSA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010696358.11e-163PREDICTED: zinc finger CCCH domain-containing protein 11
SwissprotQ0JHZ21e-147C3H11_ORYSJ; Zinc finger CCCH domain-containing protein 11
TrEMBLA0A0J8E1P01e-162A0A0J8E1P0_BETVU; Uncharacterized protein
STRINGXP_010696358.11e-163(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20280.11e-129C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]