PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca27017.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

CO-like

Protein Properties

Length: 454aa MW: 49633 Da PI: 6.783

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca27017.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	23	1.6e-07	2	41	4	37
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 r C+ ++e+ + l+C+ + lC C ++ H+ H Dca27017.1 2 RLCDFCNEETAVLYCTADTAKLCMVCDQHVHSAnslskkH 41 78***************************99554555555 PP
2	CCT	63.8	5e-22	405	447	1	43
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 R a++RYkeK+ktR++eK+irYesRKa+A++R+RvKGrFvk Dca27017.1 405 RGSAMQRYKEKKKTRRYEKQIRYESRKARADTRKRVKGRFVKT 447 6789*************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00336	3.0E-11	1	46	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	10.765	1	46	IPR000315	B-box-type zinc finger
Pfam	PF00643	1.3E-5	2	43	IPR000315	B-box-type zinc finger
CDD	cd00021	3.86E-10	2	46	No hit	No description
Pfam	PF06203	2.9E-16	405	447	IPR010402	CCT domain
PROSITE profile	PS51017	15.16	405	447	IPR010402	CCT domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 454 aa Download sequence Send to blast
MRLCDFCNEE TAVLYCTADT AKLCMVCDQH VHSANSLSKK HVRFPICDTC GSQPVSLKSI 60 SHNTSVCQVC HSLLSASSVS LPVEGFSGTP SAAQMCSMWG LDHTLQVDPN PLLDYWSDLM 120 VPSHSHSHSH SPSSLFSYIT APNNNNGNKP MSRRQQTVMK QLLALHKKDQ SSSCGSVVVN 180 DDDPDQNHSV VPPGVHHDDD NIHNHNDDDD AAFFLFDVNQ SDAHHGNGND NYYGLQSNNN 240 NNNDVNNGVW ASNVNPVPAP PPPPPAAAAV QIWDFNSGRT RGQDESASLD ASYLAADAGF 300 LINANTSLAQ PTSKLLHDIY DLKCSANLDD ITFFNNNVNQ RVRKGAATSE SNNMAGASSG 360 SVISKPITGG CADIHFMEQS VFFGGDAELS AVRSKADMEM LAQNRGSAMQ RYKEKKKTRR 420 YEKQIRYESR KARADTRKRV KGRFVKTHDA PPLA

Sequence ? help Back to Top

Protein Sequence Length: 454 aa Download sequence Send to blast

MRLCDFCNEE TAVLYCTADT AKLCMVCDQH VHSANSLSKK HVRFPICDTC GSQPVSLKSI  60
SHNTSVCQVC HSLLSASSVS LPVEGFSGTP SAAQMCSMWG LDHTLQVDPN PLLDYWSDLM  120
VPSHSHSHSH SPSSLFSYIT APNNNNGNKP MSRRQQTVMK QLLALHKKDQ SSSCGSVVVN  180
DDDPDQNHSV VPPGVHHDDD NIHNHNDDDD AAFFLFDVNQ SDAHHGNGND NYYGLQSNNN  240
NNNDVNNGVW ASNVNPVPAP PPPPPAAAAV QIWDFNSGRT RGQDESASLD ASYLAADAGF  300
LINANTSLAQ PTSKLLHDIY DLKCSANLDD ITFFNNNVNQ RVRKGAATSE SNNMAGASSG  360
SVISKPITGG CADIHFMEQS VFFGGDAELS AVRSKADMEM LAQNRGSAMQ RYKEKKKTRR  420
YEKQIRYESR KARADTRKRV KGRFVKTHDA PPLA

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021745739.1	1e-110	zinc finger protein CONSTANS-LIKE 15-like

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28050.1	2e-30	B-box type zinc finger protein with CCT domain