PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Dca26955.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
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Family | MYB | ||||||||
Protein Properties | Length: 281aa MW: 32498.7 Da PI: 7.558 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57 | 4.4e-18 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd ll ++++++G g+W++++ + g++R++k+c++rw +yl Dca26955.1 15 KGSWTDEEDNLLRNCIEKHGEGNWHRVPIRAGLNRCRKSCRLRWMNYL 62 799*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 48.5 | 2e-15 | 68 | 113 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg + ++E +l+++++k+lG++ W++Ia +++ gRt++++k++w+++l Dca26955.1 68 RGQFNEDEVDLIIRLHKLLGNR-WSLIAGRIP-GRTANDVKNYWNTHL 113 899*******************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 24.668 | 12 | 66 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-21 | 12 | 65 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.8E-28 | 13 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.3E-16 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.4E-17 | 15 | 62 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.17E-11 | 17 | 62 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.2E-23 | 66 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.5E-14 | 67 | 115 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 19.533 | 67 | 117 | IPR017930 | Myb domain |
Pfam | PF00249 | 3.1E-14 | 68 | 113 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.09E-9 | 71 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0031540 | Biological Process | regulation of anthocyanin biosynthetic process | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 281 aa Download sequence Send to blast |
MYKMGSKANC GSVRKGSWTD EEDNLLRNCI EKHGEGNWHR VPIRAGLNRC RKSCRLRWMN 60 YLKPNIKRGQ FNEDEVDLII RLHKLLGNRW SLIAGRIPGR TANDVKNYWN THLLKKMCPN 120 PKQPNNYNNN VCSKTTRTTS SSITTTTKKE GSNTASGIII KPHAWSFAKQ YGGEGGRSSV 180 VSKSSSSVIE NSEEEEEEEQ QQQQQDDKWW EKLVDIYEEK EKEKGKDDTN NYNNNNNNNI 240 NNNNSSNNND DHDDVQHILH TAYSSWDDHL LWNLDLNVWD S |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-20 | 15 | 117 | 7 | 108 | B-MYB |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00213 | DAP | Transfer from AT1G66370 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010062250.1 | 5e-66 | PREDICTED: transcription factor MYB113 | ||||
STRING | XP_010062250.1 | 2e-65 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66370.1 | 2e-58 | myb domain protein 113 |