PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca26769.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family ERF
Protein Properties Length: 339aa    MW: 37895.2 Da    PI: 4.8223
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca26769.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.41e-1984134256
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                 +y+G+r+++ +g+W+AeIrdp++     r++lg++ taeeAa+a++a ++k++g+
  Dca26769.1  84 QYRGIRQRP-WGKWAAEIRDPKK---GVRVWLGTYNTAEEAARAYDAEARKIRGN 134
                 69*******.**********954...4*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.53E-2284142IPR016177DNA-binding domain
PROSITE profilePS5103223.94784141IPR001471AP2/ERF domain
SMARTSM003809.1E-3784147IPR001471AP2/ERF domain
CDDcd000181.31E-3284141No hitNo description
Gene3DG3DSA:3.30.730.107.7E-3284142IPR001471AP2/ERF domain
PRINTSPR003672.0E-118596IPR001471AP2/ERF domain
PfamPF008473.1E-1285133IPR001471AP2/ERF domain
PRINTSPR003672.0E-11107123IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MCGGSIISSL ITINSKPLKS ITVVDDEDLK FEADFLEFKD DVFDSKVAIN SPFVPRDTFK  60
INGLKAKEVN GKSEKSANRK RKNQYRGIRQ RPWGKWAAEI RDPKKGVRVW LGTYNTAEEA  120
ARAYDAEARK IRGNKAKVNF PREAEQASSP RRTVKVRSQK PAVIPNPTPA LQNVNQNFDV  180
MNNFDEQQFD DFLFAEEKPQ ITPVSALADA GLQVFASSDG SNQYLTSDEG SHSLDISDFG  240
WGENRPKTPE ISSLFCTEDG NANKKVKLNM GNAVPAEHNH GNTISEADFE SELKHLEMPY  300
LDDIWEMDAF LASEFSQEGV NSADPWSFDD LPAFTLGVF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-2184141260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021720392.11e-116ethylene-responsive transcription factor RAP2-12-like
RefseqXP_021720393.11e-116ethylene-responsive transcription factor RAP2-12-like
TrEMBLB6UZ631e-112B6UZ63_9CARY; Dehydration-responsive element binding protein
STRINGXP_010685231.11e-105(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.37e-57related to AP2 12