PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Dca26557.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
|
||||||||
Family | STAT | ||||||||
Protein Properties | Length: 558aa MW: 62230.5 Da PI: 5.134 | ||||||||
Description | STAT family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | STAT | 172.9 | 5.1e-54 | 69 | 190 | 1 | 122 |
STAT 1 ldvvllnalgqpvekdvevvasLlyadsglvveksddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikfeipklkkypfle 99 ldvvll+a+gqp++k+++vvasL+yad+ ++vek++d+eapLL+ +dG+efss d+p+++ +Gras+kl isqLsskc nrLf+ikfe++++++ypf e Dca26557.1 69 LDVVLLDAFGQPAHKELKVVASLIYADDRSPVEKAEDDEAPLLTICDGLEFSSIDKPSRFSQGRASLKLSISQLSSKCGNRLFCIKFEVLEMENYPFCE 167 8************************************************************************************************** PP STAT 100 avskpirCisrsrntrsssltkk 122 a++ pirCisr+ n ++++ t+k Dca26557.1 168 AFTPPIRCISRTGNGNMATITWK 190 ************99999988886 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.505.10 | 8.4E-4 | 457 | 496 | IPR000980 | SH2 domain |
SuperFamily | SSF55550 | 1.28E-5 | 460 | 514 | IPR000980 | SH2 domain |
PROSITE profile | PS50001 | 9.114 | 463 | 523 | IPR000980 | SH2 domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 558 aa Download sequence Send to blast |
MQKEGHNLDG YAYGAEVLRS TASIINHFLK DPPLQLCIDS ASASEVEVED DGIWNIVGGK 60 VSCRKLFSLD VVLLDAFGQP AHKELKVVAS LIYADDRSPV EKAEDDEAPL LTICDGLEFS 120 SIDKPSRFSQ GRASLKLSIS QLSSKCGNRL FCIKFEVLEM ENYPFCEAFT PPIRCISRTG 180 NGNMATITWK KLPSGVHLFN GSTVPQPGVG HSEPQQKTVC EPRMNPPLKR VKFGELAPME 240 DINADTSVKQ REEECNSYIM PEKEAASATG TSLASIQENY GSMDNSTSDS ESADARNSES 300 KNVPCNIDLL SDLTIFRYCL GSSSERSAML KEISVAFPEL DISDMAEKVA IFSGCTHQRH 360 QITISKRLLE EGAKTWNMIS RGSHRVQWDD IVFDIEEQFM RIACCSTRSL TQQDLNFLRR 420 VSGANDYMTK ENFHKMWCWL YPVAFTVSRP EINALWASTS PKWIEGFVTK EEVEFSLQST 480 SGISEPGTFI IRFPTTRSWP HPDAGSLVAS YVATDFSLRH RQLSLDYSSG MFEPNRKPLK 540 ELLLSEPGLS RLGRVAMD |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010694737.1 | 0.0 | PREDICTED: uncharacterized protein LOC104907497 | ||||
Refseq | XP_010694738.1 | 0.0 | PREDICTED: uncharacterized protein LOC104907497 | ||||
Refseq | XP_010694739.1 | 0.0 | PREDICTED: uncharacterized protein LOC104907497 | ||||
TrEMBL | A0A0J8BB72 | 0.0 | A0A0J8BB72_BETVU; Uncharacterized protein | ||||
STRING | XP_010694737.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G78540.1 | 1e-147 | SH2 domain protein B |