PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca26277.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family MYB
Protein Properties Length: 346aa    MW: 39106.5 Da    PI: 6.7117
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca26277.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding582.1e-181562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd+ll  +++++G g+W++ +++ g++R++k+c++rw +yl
       Dca26277.1 15 KGPWTPEEDDLLTSYIQKHGHGSWRALPKMAGLNRCGKSCRLRWTNYL 62
                     79********************************************97 PP
2Myb_DNA-binding58.71.3e-1868113148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rgr+T+eE++ +++++  lG++ W++Ia++++ gRt++++k++w+++l
       Dca26277.1  68 RGRFTEEEEDNIIKLHSVLGNK-WSRIAAHLP-GRTDNEIKNYWNTHL 113
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.7841062IPR017930Myb domain
SuperFamilySSF466893.67E-3212109IPR009057Homeodomain-like
SMARTSM007171.7E-151464IPR001005SANT/Myb domain
PfamPF002492.0E-171562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.3E-251669IPR009057Homeodomain-like
CDDcd001671.39E-111762No hitNo description
PROSITE profilePS5129429.20963117IPR017930Myb domain
SMARTSM007171.3E-1767115IPR001005SANT/Myb domain
PfamPF002496.1E-1768113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.7E-2870117IPR009057Homeodomain-like
CDDcd001675.73E-1370113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MGRSPCCDDI SGLKKGPWTP EEDDLLTSYI QKHGHGSWRA LPKMAGLNRC GKSCRLRWTN  60
YLRPDIKRGR FTEEEEDNII KLHSVLGNKW SRIAAHLPGR TDNEIKNYWN THLRKKLLQM  120
GIDPVTHKPR TDLNLLSNLS QLFTTPQNLS TLINPWDINN SLRLQPPNVA ELAKLQVLQN  180
IIQILNTNNN NSLSNPSMMP LNLEMIPNFS TFSHINNAAN NNNNNISSNS QEYNCVPNNV  240
GPSHVTRGQF DCTPESFPSL DTYNNNYNNN NNKSNLSSSY ETLDENKLPS LINLSPESST  300
INQFESNNNS TNGSSSVYTP VNGDFFDGLE KLLDDGNSDL WKEFIK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C2e-28131172105C-Myb DNA-Binding Domain
1msf_C2e-28131172105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250|UniProtKB:Q9M2D9}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010695546.11e-173PREDICTED: transcription factor MYB39
SwissprotQ9SBF32e-83MYB92_ARATH; Transcription factor MYB92
TrEMBLA0A0J8B8I51e-171A0A0J8B8I5_BETVU; Uncharacterized protein
STRINGXP_010695546.11e-172(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.21e-84myb domain protein 9
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]