PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca2589.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family C3H
Protein Properties Length: 110aa    MW: 12848.2 Da    PI: 8.8185
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca2589.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.74.6e-092848525
               --SGGGGTS--TTTTT-SS-S CS
    zf-CCCH  5 lCrffartGtCkyGdrCkFaH 25
               +Cr+f  tG+C yGd CkFaH
  Dca2589.1 28 ICRNFWSTGHCVYGDACKFAH 48
               79999999************* PP
2zf-CCCH18.43.9e-067292223
               -S---SGGGGTS--TTTTT-SS CS
    zf-CCCH  2 ktelCrffartGtCkyGdrCkF 23
                +  C +f+r+G C+y drC F
  Dca2589.1 72 QRTVCYYFSRGGNCPY-DRCIF 92
               6789************.***55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902296.02E-82451IPR000571Zinc finger, CCCH-type
SMARTSM003567.1E-42550IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-82749IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-62848IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.0562851IPR000571Zinc finger, CCCH-type
SMARTSM003560.277096IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.2827097IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-57199IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-57298IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 110 aa     Download sequence    Send to blast
MDTPHYNPNS VHRRTSNTRE NFLHNDQICR NFWSTGHCVY GDACKFAHKL RNDRSQYVNS  60
GLKSTNDSNK PQRTVCYYFS RGGNCPYDRC IFPHQISEEK RDVARESASI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.12e-09C3H family protein