PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Dca25795.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
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Family | C3H | ||||||||
Protein Properties | Length: 328aa MW: 36690.1 Da PI: 8.3229 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24.6 | 4.4e-08 | 71 | 95 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+ C f+ G+Ck G++C+FaHg Dca25795.1 71 YKTRHCLKFRM-GQCKNGESCNFAHG 95 89999*****9.*************9 PP | |||||||
2 | zf-CCCH | 29.4 | 1.4e-09 | 148 | 171 | 2 | 25 |
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 k++lC++++ + +C+yG+rC+F H Dca25795.1 148 KMKLCKRYYNGEECPYGERCNFLH 171 789*******66************ PP | |||||||
3 | zf-CCCH | 44.2 | 3.1e-14 | 236 | 262 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt++C+ f tG+C++Gd+C+FaHg+ Dca25795.1 236 WKTRICMKFETTGYCPFGDTCHFAHGQ 262 8************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 6.28E-8 | 68 | 101 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.8E-4 | 70 | 96 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.3E-13 | 70 | 103 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.14 | 70 | 97 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.3E-5 | 71 | 95 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.88E-7 | 145 | 174 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.272 | 146 | 174 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.014 | 146 | 173 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.2E-8 | 148 | 172 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.2E-7 | 148 | 171 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.1E-16 | 232 | 265 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.88E-10 | 233 | 265 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.4E-7 | 235 | 262 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.094 | 235 | 263 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.3E-11 | 236 | 262 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 328 aa Download sequence Send to blast |
MSFSDQFTPY SKRVESVGFW PQAPASDEQI KTNSEIDHDP PSKRPKNFDD IKRSSPPLNP 60 PINQPNGRIF YKTRHCLKFR MGQCKNGESC NFAHGDDDLR QPPPNWQELV SGRTDERGGS 120 GGGNGNVNVN MNGTESWEEN DDDRIIHKMK LCKRYYNGEE CPYGERCNFL HKDPPTKFRD 180 VAPPPRFRDS SRESSAISIG TTGPPMVLDN YEISRIAGNG NVNGDALRGN SRPVYWKTRI 240 CMKFETTGYC PFGDTCHFAH GQAELLLPGS HPADLEPTVG KSAPLKHVPP PASDPTLVKT 300 GNVIHKSEIG LSKDPLLKWN PTKKMNRI |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021858419.1 | 1e-133 | zinc finger CCCH domain-containing protein 39 | ||||
TrEMBL | A0A0K9R3T9 | 1e-131 | A0A0K9R3T9_SPIOL; Uncharacterized protein (Fragment) | ||||
STRING | XP_010676669.1 | 1e-126 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19360.1 | 2e-62 | C3H family protein |