PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca25779.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family C3H
Protein Properties Length: 292aa    MW: 30654.1 Da    PI: 9.8081
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca25779.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.63.3e-06106128527
                 --SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                  C+++     Ck+Gd+C++aHg+
  Dca25779.1 106 MCSRYTSAEGCKFGDKCHYAHGE 128
                 5777777778***********96 PP
2zf-CCCH291.9e-09259282226
                 -S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                 kt+lC +fa+ G C +Gd+C FaHg
  Dca25779.1 259 KTKLCERFAK-GNCTFGDKCYFAHG 282
                 9*********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.683764IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.3433765IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-63864IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.4E-83963IPR000571Zinc finger, CCCH-type
PfamPF146081.74562No hitNo description
PROSITE profilePS5010312.896101129IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-7102131IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-11102132IPR000571Zinc finger, CCCH-type
SMARTSM003560.29103128IPR000571Zinc finger, CCCH-type
PfamPF146080.056116127No hitNo description
SuperFamilySSF547913.8E-16159238IPR004088K Homology domain, type 1
SMARTSM003223.7E-11162232IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.101.4E-17162235IPR004088K Homology domain, type 1
PROSITE profilePS5008415.64163227IPR004088K Homology domain, type 1
CDDcd001059.47E-15165231No hitNo description
PfamPF000132.1E-11165228IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.105.5E-14256288IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-8257288IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-5257283IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.929257284IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-7259282IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MEFGGARKRG RQDSSVNGNG GSKKNRSESE SSQPGVGSKS KPCTKFFSTS GCPFGEGCHF  60
LHHVPGGYKA VSQMLNLPPL TPQQGRNAGP PPFFDTSSAP AGKSKMCSRY TSAEGCKFGD  120
KCHYAHGEWE LGRPSLASYD DPRGGRQSSG RMGRSGGADF GASATIKITI DGSLVGSVIG  180
KGGSNTKQIS RVTGVRLAVR DHESDPNLRN IELEGSFDQI QQANSMVREL IANVKSGGGG  240
GGGGHHRHPT APGGGSNLKT KLCERFAKGN CTFGDKCYFA HGAEELRTTN AV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015875946.11e-131zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R01e-105C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A2C9UEI61e-128A0A2C9UEI6_MANES; Uncharacterized protein
STRINGcassava4.1_012715m1e-129(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.13e-74C3H family protein