PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Dca25209.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
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Family | bHLH | ||||||||
Protein Properties | Length: 134aa MW: 14879.1 Da PI: 9.0516 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 17.6 | 7.1e-06 | 27 | 71 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +++ + R +++ +++ L+el+ + +K + a++L +A++YI+ L Dca25209.1 27 ASMSSKDRKEKLGEKITALQELVSPY-----GKTDTASVLLEAMDYIRFL 71 666778999999***********999.....9****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 3.06E-7 | 20 | 76 | No hit | No description |
PROSITE profile | PS50888 | 12.487 | 22 | 71 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.31E-12 | 22 | 84 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.0E-10 | 23 | 80 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.9E-4 | 28 | 77 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 134 aa Download sequence Send to blast |
MTELKRSVAP VDQESLTSSS KCQKVDASMS SKDRKEKLGE KITALQELVS PYGKTDTASV 60 LLEAMDYIRF LHEQVKVLSA PYLYNTPATN MEVLGHYSLR SKGLCLVPVS YTDKLARNNG 120 ADLWAPIKTT RPNV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021752734.1 | 7e-68 | transcription factor bHLH153-like isoform X1 | ||||
Swissprot | Q7XJU1 | 4e-51 | BH154_ARATH; Transcription factor bHLH154 | ||||
TrEMBL | A0A0K9RQ20 | 4e-66 | A0A0K9RQ20_SPIOL; Uncharacterized protein | ||||
STRING | XP_010672412.1 | 6e-64 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31730.1 | 2e-53 | bHLH family protein |