PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca24817.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family MYB
Protein Properties Length: 381aa    MW: 43132.2 Da    PI: 5.4627
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca24817.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding347e-11858248
                     SSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGgg.....tWktIartmgkgRtlkqcksrwqkyl 48
                     grWT  Ed+l+ +a   + ++      W++Ia  ++ gR++ +++ +++++l
       Dca24817.1  8 GRWTWAEDKLFEEALVIFSSEeaeetKWSKIAGQLP-GRSPDDVRAHYLDLL 58
                     9***********************************.***********9876 PP
2Myb_DNA-binding44.92.6e-14118162347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++ + +++G+g+W++I+r +  +Rt+ q+ s+ qky
       Dca24817.1 118 PWTEEEHRLFLIGLEKYGKGDWRSISRNVVVTRTPTQVASHAQKY 162
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.369162IPR017930Myb domain
SMARTSM007174.2E-7660IPR001005SANT/Myb domain
PfamPF002493.5E-9758IPR001005SANT/Myb domain
SuperFamilySSF466892.15E-9868IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-7858IPR009057Homeodomain-like
CDDcd001671.23E-6958No hitNo description
PROSITE profilePS5129420.741111167IPR017930Myb domain
SuperFamilySSF466891.15E-16113167IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-16114166IPR006447Myb domain, plants
SMARTSM007171.0E-11115165IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-11115161IPR009057Homeodomain-like
PfamPF002492.9E-12118162IPR001005SANT/Myb domain
CDDcd001671.64E-9118162No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MIGGGETGRW TWAEDKLFEE ALVIFSSEEA EETKWSKIAG QLPGRSPDDV RAHYLDLLHD  60
VDQIDSGRVE PPSYSDDVSF WSADSFSRSS QISFGGGKSG GVGGGRNGSE AERKKGTPWT  120
EEEHRLFLIG LEKYGKGDWR SISRNVVVTR TPTQVASHAQ KYYLRQNSGK KERKRSSIHD  180
ITTVDDKSGV RSAVEQNWIP PPGSGNMIPQ HPMIQPKDET PQYSATQFGY QNFGFPILPP  240
LLLESYDIYT DAAFELDSSG LSIPKGDDIW RFWKLTETDV KTTEWTEVAG INIRAMLNRV  300
DVTFSRSYLR IVWPVKLVNG VFWFYRCVDE DYVVVRYDQV NESLSFFTVT GEYSCTPLHP  360
HVHTLVSPNN CKLMSNIFSY I
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021856464.12e-97transcription factor DIVARICATA-like
SwissprotQ8S9H74e-53DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A0K9Q7825e-96A0A0K9Q782_SPIOL; Uncharacterized protein
STRINGXP_010695074.13e-92(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04760.15e-60MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]