PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca24362.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family B3
Protein Properties Length: 566aa    MW: 62261.5 Da    PI: 7.0752
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca24362.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.44.8e-17222321198
                 EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                 f+kvl+ sdv+++grl+lpk +ae++  + +k+e++ +++ d + ++W ++++y+ + ++  yvl+ G  +  ++ ++k+gD+v+F  ++  +++l ++
  Dca24362.1 222 FEKVLSASDVSSLGRLILPKACAEAYfpSVSKPEGFPIKVLDVNRKEWGFQFRYWPNTSSrvYVLE-GVAQCLQSMHVKAGDTVTFCCTE-PDGKLIMS 318
                 99**************************667789999*****************555555547777.*******************9544.77777776 PP

                 EE- CS
          B3  96 vfr 98 
                 +++
  Dca24362.1 319 FRK 321
                 665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.4E-26213325IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-19219322IPR015300DNA-binding pseudobarrel domain
CDDcd100173.21E-23220321No hitNo description
PROSITE profilePS508639.671222323IPR003340B3 DNA binding domain
SMARTSM010195.2E-17222323IPR003340B3 DNA binding domain
PfamPF023621.1E-14222321IPR003340B3 DNA binding domain
PROSITE profilePS5105014.307453503IPR011124Zinc finger, CW-type
PfamPF074964.7E-11458500IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 566 aa     Download sequence    Send to blast
MAPKKCLNIH YCGTTTCAQW KTGWRLHSGE LANLCDICGY AFEQRVFCEE FHIDESGWRN  60
CVTCGKRLHC GCIASLHLIT LVPNGVKCSY DCADNSVPAE NAALGLTNRE SPISPIAETE  120
AQPNQAITSG VSSGNLQLTP ARVTDEREQG NMSAAFNQDS ASLALTSTPP TRPSALPSNE  180
FLSMRTQLCL ARCSDQGRGR QARHQLLSRY WPSSNSSVIP LFEKVLSASD VSSLGRLILP  240
KACAEAYFPS VSKPEGFPIK VLDVNRKEWG FQFRYWPNTS SRVYVLEGVA QCLQSMHVKA  300
GDTVTFCCTE PDGKLIMSFR KSSDSSAQTT IGSADAPTNA LPRQSASMAV IRDVHSIEQS  360
RGPPKVVLSC LPVVKTRSQK GRDIEAKSNE KSPPVYTQQH AQALKLTLEE VQGMLCPPPN  420
ENPNIVEVEG FEIEEYKDPP VLGKRSVFAT RSLGETEQWA QCDNCSKWRR LPSDFLLPPK  480
WKCTDNSWDP ARCFCSAPEE LSPEDREDLI KLSKGSKKKK MRMVAKVMQE TENSVINLED  540
DPTNEAGTSA GATSSKVQNK EAADQP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A1e-4521532617128B3 domain-containing transcription repressor VAL1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-123HSI2-like 1