PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca24326.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family MIKC_MADS
Protein Properties Length: 232aa    MW: 26635.3 Da    PI: 8.6879
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca24326.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF793.2e-251059150
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                k+ien +nrqvt+skRrng++KKA+EL vLCda v++ii+ss+ kl+ + 
  Dca24326.1 10 KKIENLTNRQVTYSKRRNGLFKKANELTVLCDATVSIIILSSNLKLHHFL 59
                68*********************************************996 PP
2K-box84.62e-2874172199
       K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                 yqk+ g++ ++++++++q+el+kL++ +++Lq+e+R+++G +Le+L++ eL  L +++++s+  iR++K++ + +qi++++kk ++ +e +k+L +++e
  Dca24326.1  74 YQKALGVDIWATHEKKMQEELQKLNETNRELQTEIRRRMGGCLEDLNFDELCGLGHEMQHSVALIRERKYKKIESQIDTTKKKVRNGKEVHKSLLQEFE 172
                 78999999***************************************************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.1E-33261IPR002100Transcription factor, MADS-box
PROSITE profilePS5006628.749262IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.75E-32497IPR002100Transcription factor, MADS-box
PROSITE patternPS003500458IPR002100Transcription factor, MADS-box
CDDcd002652.09E-36483No hitNo description
PRINTSPR004047.0E-25424IPR002100Transcription factor, MADS-box
PfamPF003194.7E-221158IPR002100Transcription factor, MADS-box
PRINTSPR004047.0E-252439IPR002100Transcription factor, MADS-box
PRINTSPR004047.0E-253960IPR002100Transcription factor, MADS-box
PfamPF014867.3E-1785171IPR002487Transcription factor, K-box
PROSITE profilePS5129713.73687177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010093Biological Processspecification of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MAKRGKIEIK KIENLTNRQV TYSKRRNGLF KKANELTVLC DATVSIIILS SNLKLHHFLS  60
PSSNLTTKDV YDRYQKALGV DIWATHEKKM QEELQKLNET NRELQTEIRR RMGGCLEDLN  120
FDELCGLGHE MQHSVALIRE RKYKKIESQI DTTKKKVRNG KEVHKSLLQE FETPKDEEAQ  180
YGLVENGEYN NNVVEYDNDA SRVVGLRMQP CHQPNLHNGA ASGSCVTTYA LL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the genetic control of flower development. Acts in conjunction with GLOBOSA (glo).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00077ChIP-seqTransfer from AT3G54340Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010672335.11e-106PREDICTED: floral homeotic protein DEFICIENS isoform X1
SwissprotP237064e-87DEFA_ANTMA; Floral homeotic protein DEFICIENS
TrEMBLQ413541e-131Q41354_SILLA; SLM3 protein
STRINGXP_010672335.11e-105(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.17e-65MIKC_MADS family protein
Publications ? help Back to Top
  1. Schwarz-Sommer Z, et al.
    Characterization of the Antirrhinum floral homeotic MADS-box gene deficiens: evidence for DNA binding and autoregulation of its persistent expression throughout flower development.
    EMBO J., 1992. 11(1): p. 251-63
    [PMID:1346760]
  2. Sommer H, et al.
    Deficiens, a homeotic gene involved in the control of flower morphogenesis in Antirrhinum majus: the protein shows homology to transcription factors.
    EMBO J., 1990. 9(3): p. 605-13
    [PMID:1968830]
  3. Gallois JL, et al.
    Functional characterization of the plant ubiquitin regulatory X (UBX) domain-containing protein AtPUX7 in Arabidopsis thaliana.
    Gene, 2013. 526(2): p. 299-308
    [PMID:23747397]
  4. Davies B,Egea-Cortines M,de Andrade Silva E,Saedler H,Sommer H
    Multiple interactions amongst floral homeotic MADS box proteins.
    EMBO J., 1996. 15(16): p. 4330-43
    [PMID:8861961]