PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca24140.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

Nin-like

Protein Properties

Length: 845aa MW: 94031.2 Da PI: 8.131

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca24140.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.8	5e-29	563	613	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +k+isl++l++yF++++kdAAk++gvc+T+LKriCRq+GI RWP+Rkik++ Dca24140.1 563 QKTISLQVLRQYFAGSLKDAAKNIGVCPTTLKRICRQHGILRWPSRKIKKV 613 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.018	552	633	IPR003035	RWP-RK domain
Pfam	PF02042	2.7E-24	565	613	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.11E-20	748	833	No hit	No description
SMART	SM00666	8.0E-19	751	834	IPR000270	PB1 domain
PROSITE profile	PS51745	20.408	751	834	IPR000270	PB1 domain
CDD	cd06407	3.22E-36	752	831	No hit	No description
Gene3D	G3DSA:3.10.20.240	2.4E-21	752	831	No hit	No description
Pfam	PF00564	3.6E-15	753	832	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 845 aa Download sequence Send to blast
MDEGGYTPPN ATGFGNIDYD FMDHLLDEGC WLQTAEGSSF LQHGSSTSRS SIYPSYRVPC 60 LDATPENNLS QNSSKEEQVV DSRKSIVPGG KSGNRKLSFS WEGEELNRIL WIEPKANLGP 120 STTVKDRLIL AISQLSDMNR NRDVLIQIWV PVKKGVKSFL TTVEQPHFYH PNSKRLVHYR 180 DVSEKYEFLA DENTKQALGL PGRVFLGKVP EWTPDVRMFR QEEYPRVEFA QQCDVRGSIA 240 LPVFEKGSGD CLAVVEIILT TQKFNYRPEV DSVCKALETV HLRSSEILST CREQGESRSY 300 EAILPEILTV LRTVSQTHDL PLAQAWAPCS QQRKGGCWHS DKNAPCISTI DSTCYVGDQR 360 VLEYHKACAE HHLSKGRGGI VWKAFETTQP CFATDVTEFS KADYPLSHHA KMFGLRGAVA 420 IRVRSIYPEM NDYVLEFYLP TDLMETGLSF HGKIWQTIST VIQQSCPSLR FIPDKLTAEN 480 ETSSWFSHIM TPQKKGKKTG VLLDFGEKWS NSEPELQLGG RLFSDCENGK QGSKSEGFSG 540 VTSGGSFALG VRKTGEKRKT KAQKTISLQV LRQYFAGSLK DAAKNIGVCP TTLKRICRQH 600 GILRWPSRKI KKVGHSLKKL QIVIDSVQGA QGSLQLSSFY TDFPELNNVA NPQLQPPNQA 660 AVINPNDQSN PNSTNQAEGV IFSSGATTSN SGSTSSSHTS TSSHCFQSVP NTSSEDHLGS 720 FKRARSEAEL NISARKEHSQ VKERVINTAG VFKAKAAFGE EKVRFTVLPN MGFHHLQQEI 780 AKRFHLSGMS KFGIKYLDDD REWVLLTCDA DLEECIDIHR SSKCYTIKLN VSASLGSSMS 840 SGGFL

Sequence ? help Back to Top

Protein Sequence Length: 845 aa Download sequence Send to blast

MDEGGYTPPN ATGFGNIDYD FMDHLLDEGC WLQTAEGSSF LQHGSSTSRS SIYPSYRVPC  60
LDATPENNLS QNSSKEEQVV DSRKSIVPGG KSGNRKLSFS WEGEELNRIL WIEPKANLGP  120
STTVKDRLIL AISQLSDMNR NRDVLIQIWV PVKKGVKSFL TTVEQPHFYH PNSKRLVHYR  180
DVSEKYEFLA DENTKQALGL PGRVFLGKVP EWTPDVRMFR QEEYPRVEFA QQCDVRGSIA  240
LPVFEKGSGD CLAVVEIILT TQKFNYRPEV DSVCKALETV HLRSSEILST CREQGESRSY  300
EAILPEILTV LRTVSQTHDL PLAQAWAPCS QQRKGGCWHS DKNAPCISTI DSTCYVGDQR  360
VLEYHKACAE HHLSKGRGGI VWKAFETTQP CFATDVTEFS KADYPLSHHA KMFGLRGAVA  420
IRVRSIYPEM NDYVLEFYLP TDLMETGLSF HGKIWQTIST VIQQSCPSLR FIPDKLTAEN  480
ETSSWFSHIM TPQKKGKKTG VLLDFGEKWS NSEPELQLGG RLFSDCENGK QGSKSEGFSG  540
VTSGGSFALG VRKTGEKRKT KAQKTISLQV LRQYFAGSLK DAAKNIGVCP TTLKRICRQH  600
GILRWPSRKI KKVGHSLKKL QIVIDSVQGA QGSLQLSSFY TDFPELNNVA NPQLQPPNQA  660
AVINPNDQSN PNSTNQAEGV IFSSGATTSN SGSTSSSHTS TSSHCFQSVP NTSSEDHLGS  720
FKRARSEAEL NISARKEHSQ VKERVINTAG VFKAKAAFGE EKVRFTVLPN MGFHHLQQEI  780
AKRFHLSGMS KFGIKYLDDD REWVLLTCDA DLEECIDIHR SSKCYTIKLN VSASLGSSMS  840
SGGFL

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021867276.1	0.0	protein NLP2-like
Swissprot	Q7X9B9	0.0	NLP2_ARATH; Protein NLP2
TrEMBL	A0A0K9QYB0	0.0	A0A0K9QYB0_SPIOL; Uncharacterized protein
STRING	XP_010690230.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35270.1	0.0	Nin-like family protein