PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca23216.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family ERF
Protein Properties Length: 317aa    MW: 35660.7 Da    PI: 8.1631
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca23216.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.64.1e-15276317145
         AP2   1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAaka 45 
                 s+y+GVr+++ +g++++eIrdp   + k  r++lg+++ta eAa+a
  Dca23216.1 276 SHYRGVRRRP-WGKFASEIRDP---NrKGSRIWLGTYDTAVEAARA 317
                 79********.**********9...6566***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.60.20.102.4E-17132184IPR029055Nucleophile aminohydrolases, N-terminal
SuperFamilySSF562353.05E-15137185IPR029055Nucleophile aminohydrolases, N-terminal
SMARTSM009487.7E-11138160IPR000426Proteasome alpha-subunit, N-terminal domain
PROSITE patternPS003880138160IPR000426Proteasome alpha-subunit, N-terminal domain
PfamPF105841.8E-13138160IPR000426Proteasome alpha-subunit, N-terminal domain
SuperFamilySSF541712.68E-14276317IPR016177DNA-binding domain
CDDcd000181.17E-19276317No hitNo description
PfamPF008473.4E-9276317IPR001471AP2/ERF domain
SMARTSM003807.7E-12277317IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.9E-21277317IPR001471AP2/ERF domain
PROSITE profilePS5103218.571277317IPR001471AP2/ERF domain
PRINTSPR003672.6E-10278289IPR001471AP2/ERF domain
PRINTSPR003672.6E-10301317IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006511Biological Processubiquitin-dependent protein catabolic process
GO:0019773Cellular Componentproteasome core complex, alpha-subunit complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0004175Molecular Functionendopeptidase activity
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MLLLLLRATT DVVTLLLLLR WCDPHYRCEQ LLLSLRGCAM SLAALLLHAL LLLCPAASIN  60
TLLCYCYFCH CAAARCFCHC VVAAVALLLR TVVVALLLMS LAVVAIAAYC QIAFTHDIIF  120
WDCWVSPIVK MFLTRTEYDR GVNTFSPEGR LFQVEYAIEA IKLGSTAIGL KTKEGELYLL  180
WKNVSPPHCC NNSNVYDINF ASTSSVDTVN VEDLLVGFDD NFSFEAKERR PSKFEERRPS  240
MKIAVPQPAK KYEVVVELTT QPAATASNQL VEERRSHYRG VRRRPWGKFA SEIRDPNRKG  300
SRIWLGTYDT AVEAARA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ley_R1e-21131187157Proteasome subunit alpha type-5
5lez_D1e-21131187157Proteasome subunit alpha type-5
5lez_R1e-21131187157Proteasome subunit alpha type-5
5lf0_D1e-21131187157Proteasome subunit alpha type-5
5lf0_R1e-21131187157Proteasome subunit alpha type-5
5lf1_D1e-21131187157Proteasome subunit alpha type-5
5lf1_R1e-21131187157Proteasome subunit alpha type-5
5lf3_D1e-21131187157Proteasome subunit alpha type-5
5lf3_R1e-21131187157Proteasome subunit alpha type-5
5lf4_D1e-21131187157Proteasome subunit alpha type-5
5lf4_R1e-21131187157Proteasome subunit alpha type-5
5lf6_D1e-21131187157Proteasome subunit alpha type-5
5lf6_R1e-21131187157Proteasome subunit alpha type-5
5lf7_D1e-21131187157Proteasome subunit alpha type-5
5lf7_R1e-21131187157Proteasome subunit alpha type-5
5ln3_E1e-21131187157Proteasome subunit alpha type-5
5m32_D1e-21131187157Proteasome subunit alpha type-5
5m32_R1e-21131187157Proteasome subunit alpha type-5
6avo_H1e-21131187157Proteasome subunit alpha type-5
6avo_M1e-21131187157Proteasome subunit alpha type-5
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.13e-25ethylene responsive element binding factor 5