PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca22868.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family C3H
Protein Properties Length: 412aa    MW: 43967.9 Da    PI: 8.4017
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca22868.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.91.1e-106792227
                -S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                ++++C+++++tG+Ck+G +CkF+H++
  Dca22868.1 67 GEKECSYYLKTGQCKFGRTCKFHHPQ 92
                6789********************97 PP
2zf-CCCH361.2e-11222248127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                 +++++C+++++tG Ck+G +C+++H+p
  Dca22868.1 222 PGEPECQYYLKTGSCKFGTSCRYHHPP 248
                 5799*********************97 PP
3zf-CCCH39.11.2e-12265290126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 ++t +C f++++G+Ck+G +CkF H+
  Dca22868.1 265 PGTQPCTFYMQNGYCKFGTTCKFDHP 290
                 689**********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.9676693IPR000571Zinc finger, CCCH-type
SMARTSM003565.6E-46792IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-86792IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.55E-66893IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.0E-47191IPR000571Zinc finger, CCCH-type
SMARTSM003562.9E-6221248IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.061221249IPR000571Zinc finger, CCCH-type
PfamPF006426.2E-9223248IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.33E-6225249IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-4227247IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-7264291IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.375264292IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.46E-7264292IPR000571Zinc finger, CCCH-type
PfamPF006425.8E-10265290IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.6E-6267289IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MDLYRRNHGS DVDHQSNQWG ETGLEESMWR LGISGQEAYP ERPGAVVAAR LVGGDYPERP  60
GELPCQGEKE CSYYLKTGQC KFGRTCKFHH PQPAGVSMPA AAPPFYPTVQ TPSGHVPEQQ  120
PLGPSSSYRV ARPPLVPGSY APGSYGPVLL SPGVVPMPGW GSYSGPVRPA LSPGAQITGG  180
SAYGVTPVSP STPGLAGSYP AFPSSAVQSG IPAKEHNYPE RPGEPECQYY LKTGSCKFGT  240
SCRYHHPPDR GAACFLGPLG LPLRPGTQPC TFYMQNGYCK FGTTCKFDHP VGLMKYSPSA  300
SSLTEMPVAP YLGVSSPSAS QSDPASVGLT VSPAPPLRGH QSVQGSTMLS SEEITRRLRL  360
HIHVERRLLG FASLPFLTIL PSKRDTVRIV DVFIVSFSSS SFSNCLALPV IG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010684493.11e-155PREDICTED: zinc finger CCCH domain-containing protein 32
SwissprotQ84W911e-109C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A0K9RJK71e-153A0A0K9RJK7_SPIOL; Uncharacterized protein
STRINGXP_010684493.11e-155(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-102C3H family protein