PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca22636.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

G2-like

Protein Properties

Length: 344aa MW: 35484.3 Da PI: 7.1573

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca22636.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	96.4	2.1e-30	127	180	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +prl+Wtp+LH+rFv+av++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl Dca22636.1 127 RPRLVWTPQLHKRFVDAVAHL-GIKNAVPKTIMQLMSVDGLTRENVASHLQKYRL 180 59*****************.******************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.58E-20	124	184	IPR009057	Homeodomain-like
PROSITE profile	PS51294	11.059	124	183	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.4E-30	126	185	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.9E-24	128	180	IPR006447	Myb domain, plants
Pfam	PF00249	1.4E-7	130	179	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence Send to blast
MREDDSSWFS KWEDELPSPE ELMPLSQTLI TPDLASALDI RGPGGGGGGG VVAPTTLFHH 60 HRHHNYGGQL QQQQQQQSSS AAAQAAPTHP NSSEFDSSSA ELGGGGGGGG GGGVGSELGE 120 PARTLKRPRL VWTPQLHKRF VDAVAHLGIK NAVPKTIMQL MSVDGLTREN VASHLQKYRL 180 YLKRMQGGGG GISGGGGNGP GGLGGTGDAA TDRLFASSPV PAHFLHQPAG GGAGGAGVGN 240 GHGHGPVAGP RPNADHFMSY VPVAALHQQQ IQAQYRQMGH FGAAPGGGGG TQFDHPFLSR 300 QAQLCPNRNG VVMQNSSGFV EDVETSAVAN SGRKVLTLFP TADD

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence Send to blast

MREDDSSWFS KWEDELPSPE ELMPLSQTLI TPDLASALDI RGPGGGGGGG VVAPTTLFHH  60
HRHHNYGGQL QQQQQQQSSS AAAQAAPTHP NSSEFDSSSA ELGGGGGGGG GGGVGSELGE  120
PARTLKRPRL VWTPQLHKRF VDAVAHLGIK NAVPKTIMQL MSVDGLTREN VASHLQKYRL  180
YLKRMQGGGG GISGGGGNGP GGLGGTGDAA TDRLFASSPV PAHFLHQPAG GGAGGAGVGN  240
GHGHGPVAGP RPNADHFMSY VPVAALHQQQ IQAQYRQMGH FGAAPGGGGG TQFDHPFLSR  300
QAQLCPNRNG VVMQNSSGFV EDVETSAVAN SGRKVLTLFP TADD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5lxu_A	1e-33	127	183	1	57	Transcription factor LUX
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269\|PubMed:20331973}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269\|PubMed:20331973}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021864004.1	1e-120	transcription factor MYBC1-like
Swissprot	O22210	2e-60	MYBC1_ARATH; Transcription factor MYBC1
TrEMBL	A0A0K9QBX6	1e-119	A0A0K9QBX6_SPIOL; Uncharacterized protein
STRING	XP_010673075.1	1e-115	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10760.1	5e-69	G2-like family protein

Publications ? help Back to Top
Sardesai N,Laluk K,Mengiste T,Gelvin S The Arabidopsis Myb transcription factor MTF1 is a unidirectional regulator of susceptibility to Agrobacterium. Plant Signal Behav, 2018. [PMID:24785741]