PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca21863.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family MYB
Protein Properties Length: 253aa    MW: 29382.8 Da    PI: 6.512
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca21863.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.52.2e-16550348
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +W++eEd+ll ++++q+G g W++I+   g +R++k+c++rw++yl
       Dca21863.1  5 AWSEEEDQLLRKCIEQYGEGKWHRIPLLAGINRCRKSCRLRWLNYL 50
                     7*****************************99************97 PP
2Myb_DNA-binding52.89.4e-1756100147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++T eE el+++++++lG++ W++Ia +++ gRt++++k++w+ +
       Dca21863.1  56 RGKFTDEEVELIIKLHNLLGNR-WSLIAGRLP-GRTANDVKNFWHCH 100
                      89********************.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.593150IPR017930Myb domain
SMARTSM007179.8E-15252IPR001005SANT/Myb domain
PfamPF002495.7E-16550IPR001005SANT/Myb domain
SuperFamilySSF466897.7E-28597IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.8E-23557IPR009057Homeodomain-like
CDDcd001672.33E-11550No hitNo description
PROSITE profilePS5129425.4851105IPR017930Myb domain
SMARTSM007174.1E-1655103IPR001005SANT/Myb domain
PfamPF002491.1E-145698IPR001005SANT/Myb domain
CDDcd001671.31E-1058101No hitNo description
Gene3DG3DSA:1.10.10.604.1E-2458105IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MGGVAWSEEE DQLLRKCIEQ YGEGKWHRIP LLAGINRCRK SCRLRWLNYL RPNIKRGKFT  60
DEEVELIIKL HNLLGNRWSL IAGRLPGRTA NDVKNFWHCH LSKRLNSHLI ISQSNAATKN  120
HTKNPLVTES SSFKVVVEQE KQLITQNSSF RLPEHHEIVP SAHDTAYQYS NSNSNSNNNN  180
NNVGLLENDK FSREENIILQ ERSNIDDIDF ELDEIKITAA GDHENYYWSF DDLLYDIEQQ  240
NKAFEAKYEG LLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-2051079110B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017416639.11e-72PREDICTED: transcription factor MYB113-like
SwissprotQ9FNV91e-53MY113_ARATH; Transcription factor MYB113
TrEMBLA0A142D8G12e-79A0A142D8G1_9CARY; Myb transcription factor 5 (Fragment)
STRINGXP_007140451.13e-69(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.11e-55myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]