PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca21837.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family MYB
Protein Properties Length: 954aa    MW: 107978 Da    PI: 5.0448
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca21837.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.19.5e-14853248
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     g W   Ede+l+ av ++G+++W++I++ +  ++++kqck rw+ +l
       Dca21837.1  8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 53
                     78*****************************.************986 PP
2Myb_DNA-binding32.81.6e-1060103248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        WT eEde+l+++ k++++  W+tIa  +g  Rt+ qc +r+ k+l
       Dca21837.1  60 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 103
                      68*****************99.********8..**********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.008257IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.4E-18557IPR009057Homeodomain-like
SMARTSM007177.0E-15655IPR001005SANT/Myb domain
CDDcd001679.33E-121053No hitNo description
PfamPF139215.1E-131070No hitNo description
SuperFamilySSF466894.67E-2133109IPR009057Homeodomain-like
CDDcd116592.61E-3055107No hitNo description
SMARTSM007179.5E-1358105IPR001005SANT/Myb domain
PROSITE profilePS5129416.60158107IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.7E-1458105IPR009057Homeodomain-like
PfamPF118315.7E-56407651IPR021786Pre-mRNA splicing factor component Cdc5p/Cef1
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009870Biological Processdefense response signaling pathway, resistance gene-dependent
GO:0010204Biological Processdefense response signaling pathway, resistance gene-independent
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 954 aa     Download sequence    Send to blast
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT  60
EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDSAVNDV SAYEQGDDPR  120
KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR  180
LASLQKRREL KAAGIDARQR KRKRRGIDYN AEIPFEKRPP PGFYDTIDED KPVEQPNFPT  240
TIEELEGERR ADKEARLRKQ DIAKNKIAQR QDAPAAIMQA NKLNDPESVR KRSKLMLPPP  300
QISDQELEEI ARMGYATDIL AGNQEHLEGS GATRALLGDY SQTPRPGMTP MRTPQRTPAG  360
KGDAIMMEAE NLARLRESQT PLLGGNNPEL HPSDFSGVTP KRREVQTPNP MLTPLVTPGG  420
SGLTPRLGMT PSRDGNSFGL TPKGTPIRDE LHINEGLDMH DSAKLEARRQ AELKKNLRMG  480
LSSLPDPKNE YEVVGRPAPE DAEEQEEKIE EDMSDRLARE RAEEEARLQA LLRKRSKVLQ  540
RELPRPPTAS IELIRQSLMR ADEDKSSFAP PTEIEQADEI IRKELLSLLE HDNAKYPLND  600
KEKKKGDKRA ARGIPVIEDF DEAVLTEAVS LIEEESQYLR RAMGREEDSL DEYVEAHKTC  660
LNDMMYFPTR EAYGLASIAG PLDRLAALQS DFENVKRKMD EDNKKAQRNE KKVDILTKGY  720
KTREAKLREQ IELTFKQMNT ASTELDCFLA LQRQEKSAAA FRIKGLWEEV QKQKELETTL  780
QKRYGDLIAE VERIQPLMEQ YKLQAQQLEE LEAKKRAEEL EAKKRADELE AKKRAEESVP  840
EAPEPVSMEV DSSNGEKLHN DDDKVNEMSV DKETPVDGTQ VIPPASENLP INSSSDSQGA  900
VEDIKAVDNV VVNPDNVAGV AVQNDGFATE EAVASNPKES VEGETDLTSQ VDEP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5mqf_L0.027953799Cell division cycle 5-like protein
5xjc_L0.027953799Cell division cycle 5-like protein
5yzg_L0.027953799Cell division cycle 5-like protein
5z56_L0.027953799Cell division cycle 5-like protein
5z57_L0.027953799Cell division cycle 5-like protein
5z58_L0.027953799Cell division cycle 5-like protein
6ff4_L0.027953799Cell division cycle 5-like protein
6ff7_L0.027953799Cell division cycle 5-like protein
6icz_L0.027953799Cell division cycle 5-like protein
6id0_L0.027953799Cell division cycle 5-like protein
6id1_L0.027953799Cell division cycle 5-like protein
6qdv_O0.027953799Cell division cycle 5-like protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1185204KRRELKAAGIDARQRKRKRR
2198204QRKRKRR
3199204RKRKRR
Functional Description ? help Back to Top
Source Description
UniProtComponent of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00028SELEXTransfer from AT1G09770Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010674469.10.0PREDICTED: cell division cycle 5-like protein
SwissprotP929480.0CDC5L_ARATH; Cell division cycle 5-like protein
TrEMBLA0A0K9RDE10.0A0A0K9RDE1_SPIOL; Uncharacterized protein
STRINGXP_010674469.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09770.10.0cell division cycle 5
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Li S, et al.
    MAC3A and MAC3B, Two Core Subunits of the MOS4-Associated Complex, Positively Influence miRNA Biogenesis.
    Plant Cell, 2018. 30(2): p. 481-494
    [PMID:29437988]