PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca21771.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

NAC

Protein Properties

Length: 379aa MW: 43554.2 Da PI: 4.7589

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca21771.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	68.1	2.4e-21	27	147	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykv..ePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk.evlskkg 97 p G+rF+P d+ + +yL +k+ g ++++ i ++++y P++L ++++++ yfF+k +kk+++ +r r++ g+W+ + +++ ++ ++ Dca21771.1 27 PIGYRFKPDDHMIFEHYLPRKILGYPVTF---IGDIELYGDnqSPNNLF--GSSDDTDFYFFTKLKKKKKNHERVIRTAGGGTWRGQNQEQhDIEI-GE 119 89**********************776...8999998542386..346889************************77765515555.44 PP NAM 98 el..vglkktLvfykgrapkgektdWvmheyrl 128 el +g+k+ ++++k ++ +Wvmheyr+ Dca21771.1 120 ELipIGTKRAFTYHKS-----KQDSWVMHEYRI 147 44459*****43.....3567****97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.22E-22	22	157	IPR003441	NAC domain
PROSITE profile	PS51005	24.98	26	187	IPR003441	NAC domain
Pfam	PF02365	5.3E-17	27	147	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 379 aa Download sequence Send to blast
MESSSTIIQS PPSTSYTNNH NENTFIPIGY RFKPDDHMIF EHYLPRKILG YPVTFIGDIE 60 LYGDNQSPNN LFGSSDDTDF YFFTKLKKKK KNHERVIRTA GGGTWRGQNQ EQHDIEIGEE 120 LIPIGTKRAF TYHKSKQDSW VMHEYRIDNT YVNYVMHGSN TSVYSLTPDK LPNLNPDDIV 180 FCHVSNKSKK DAQGKLKRAL VQNHPLPCKK QKVAHNNCVD NVTQLNSTRV NDFVNNNVEN 240 DSLHELLIKN FDNFSSTEDE LKEQLIMRSH GQVEKDVHKF YKNVCDSEEP THEGQNTLTS 300 TSEDQDDEVE VDWLDIIASS SVQQQQQEEE NTQWTQEMMD DDFILMPVTE EEIDIVAECS 360 MKNPELLGAS VVHQPLSCA

Sequence ? help Back to Top

Protein Sequence Length: 379 aa Download sequence Send to blast

MESSSTIIQS PPSTSYTNNH NENTFIPIGY RFKPDDHMIF EHYLPRKILG YPVTFIGDIE  60
LYGDNQSPNN LFGSSDDTDF YFFTKLKKKK KNHERVIRTA GGGTWRGQNQ EQHDIEIGEE  120
LIPIGTKRAF TYHKSKQDSW VMHEYRIDNT YVNYVMHGSN TSVYSLTPDK LPNLNPDDIV  180
FCHVSNKSKK DAQGKLKRAL VQNHPLPCKK QKVAHNNCVD NVTQLNSTRV NDFVNNNVEN  240
DSLHELLIKN FDNFSSTEDE LKEQLIMRSH GQVEKDVHKF YKNVCDSEEP THEGQNTLTS  300
TSEDQDDEVE VDWLDIIASS SVQQQQQEEE NTQWTQEMMD DDFILMPVTE EEIDIVAECS  360
MKNPELLGAS VVHQPLSCA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	2e-14	26	187	15	168	Stress-induced transcription factor NAC1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63790.1	2e-16	NAC domain containing protein 102