PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca21109.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family C3H
Protein Properties Length: 1053aa    MW: 116884 Da    PI: 4.3619
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca21109.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.71.5e-06561579625
                 -SGGGGTS--TTTTT-SS-S CS
     zf-CCCH   6 CrffartGtCkyGdrCkFaH 25 
                 C +fa+ G+C  G++C+F H
  Dca21109.1 561 CEYFAK-GWCIKGSNCRFLH 579
                 ******.************* PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.389555582IPR000571Zinc finger, CCCH-type
SMARTSM003560.0065555581IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.63E-7555580IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.1E-4560582IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010220Biological Processpositive regulation of vernalization response
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1053 aa     Download sequence    Send to blast
MAASSGEEED EFEYEEVEVE EEVEVEEEVE DDDDDGEIEE LVEEEDKEPL EEEEEEEPME  60
EEEEEEEEPM EDEEEPMEEE EEEPMEDEEE EKPMEDEEEE EEEYEEVEEV VEEKRGEVIE  120
EEEEEEEYEE IEEEVEVTDD DEDEEMEVAA AAVAVAVSVK NQSAVGSSDS PLPVTDHPLH  180
DACQDKQAKA NEVCSRSTIQ DTVNTDVAAA PLDIPAVGAN GSTLESSSRG QQNIKRKEPV  240
RDTVFSEVAA APLDISAVEA NGSTLGSSSR GQQNNKRKVA LQDTVTSEVA APPVIQAVEA  300
SMPTLGSPTP CQKNKKGKEV LSVNDGSSNP PARVKMSAEI RTKLKADKAE FQQGRVQRSP  360
LVTPVKETFS IDDGSSNTPT RLKSDDNPPK LKADAAEGQQ GRVQRSPLVS PVKEKRSIDD  420
GSTNLPARLK SEANPPKLRG DTMELKHGLV EKSPLIAPVK AEKSHVKHIA PVGTSEKYAP  480
GEDNIHDMDQ KALRSEILFE TPDMVETTVP GQKEDLHLPS SENMDQNALR FSRYYTPQIR  540
LRSSSPKAES EAVSKRSAIV CEYFAKGWCI KGSNCRFLHK RDQVDYTKGQ VEGFLESTDT  600
VIGPGKGVKD AAGASASFAH KQPKSFMAES DDMLPVSTGG KYTDKDHRES VNDKDNFRML  660
ERDTLYPRLS VSSQRSPHSK EGSKLFSGQN EAEVDMFKGS CSSDRLERHG SSASLGRSTL  720
LDNLTPRQGF LSEGAGVTSG TQMNHSSLSY VVVEESVALR RQYTLELHSS PISGFSSKSS  780
GSFRNAPLLD NSSVKELLES YKKNKQKFTP YNWEPSVPFR PSHFIPSFTR SSSDVQYDPL  840
RDSIDQPYAG RGSLRNSSYG QTKGPKHQHA QSISGWKSVE SNKMLHSDSN YKDYYNHDKD  900
ARLVEAESAA ISATNAENKN TSDEEILGVA ASVKDVLKAN RSISDGNSQL KVDDLRHKGQ  960
TNDLDEEESR VIKIFRAALI EFVKELMKPV WHEGRLSKDV YKVIVQKAED KILSTLPSTE  1020
VPNTPESIKQ YLSSSRPNIL KLIQAYVDKY GKF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021866274.11e-134protein FRIGIDA-ESSENTIAL 1-like isoform X2
TrEMBLA0A0K9S0A11e-132A0A0K9S0A1_SPIOL; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.19e-27C3H family protein