PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Dca21109.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
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Family | C3H | ||||||||
Protein Properties | Length: 1053aa MW: 116884 Da PI: 4.3619 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 19.7 | 1.5e-06 | 561 | 579 | 6 | 25 |
-SGGGGTS--TTTTT-SS-S CS zf-CCCH 6 CrffartGtCkyGdrCkFaH 25 C +fa+ G+C G++C+F H Dca21109.1 561 CEYFAK-GWCIKGSNCRFLH 579 ******.************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.389 | 555 | 582 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0065 | 555 | 581 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.63E-7 | 555 | 580 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.1E-4 | 560 | 582 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010220 | Biological Process | positive regulation of vernalization response | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1053 aa Download sequence Send to blast |
MAASSGEEED EFEYEEVEVE EEVEVEEEVE DDDDDGEIEE LVEEEDKEPL EEEEEEEPME 60 EEEEEEEEPM EDEEEPMEEE EEEPMEDEEE EKPMEDEEEE EEEYEEVEEV VEEKRGEVIE 120 EEEEEEEYEE IEEEVEVTDD DEDEEMEVAA AAVAVAVSVK NQSAVGSSDS PLPVTDHPLH 180 DACQDKQAKA NEVCSRSTIQ DTVNTDVAAA PLDIPAVGAN GSTLESSSRG QQNIKRKEPV 240 RDTVFSEVAA APLDISAVEA NGSTLGSSSR GQQNNKRKVA LQDTVTSEVA APPVIQAVEA 300 SMPTLGSPTP CQKNKKGKEV LSVNDGSSNP PARVKMSAEI RTKLKADKAE FQQGRVQRSP 360 LVTPVKETFS IDDGSSNTPT RLKSDDNPPK LKADAAEGQQ GRVQRSPLVS PVKEKRSIDD 420 GSTNLPARLK SEANPPKLRG DTMELKHGLV EKSPLIAPVK AEKSHVKHIA PVGTSEKYAP 480 GEDNIHDMDQ KALRSEILFE TPDMVETTVP GQKEDLHLPS SENMDQNALR FSRYYTPQIR 540 LRSSSPKAES EAVSKRSAIV CEYFAKGWCI KGSNCRFLHK RDQVDYTKGQ VEGFLESTDT 600 VIGPGKGVKD AAGASASFAH KQPKSFMAES DDMLPVSTGG KYTDKDHRES VNDKDNFRML 660 ERDTLYPRLS VSSQRSPHSK EGSKLFSGQN EAEVDMFKGS CSSDRLERHG SSASLGRSTL 720 LDNLTPRQGF LSEGAGVTSG TQMNHSSLSY VVVEESVALR RQYTLELHSS PISGFSSKSS 780 GSFRNAPLLD NSSVKELLES YKKNKQKFTP YNWEPSVPFR PSHFIPSFTR SSSDVQYDPL 840 RDSIDQPYAG RGSLRNSSYG QTKGPKHQHA QSISGWKSVE SNKMLHSDSN YKDYYNHDKD 900 ARLVEAESAA ISATNAENKN TSDEEILGVA ASVKDVLKAN RSISDGNSQL KVDDLRHKGQ 960 TNDLDEEESR VIKIFRAALI EFVKELMKPV WHEGRLSKDV YKVIVQKAED KILSTLPSTE 1020 VPNTPESIKQ YLSSSRPNIL KLIQAYVDKY GKF |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021866274.1 | 1e-134 | protein FRIGIDA-ESSENTIAL 1-like isoform X2 | ||||
TrEMBL | A0A0K9S0A1 | 1e-132 | A0A0K9S0A1_SPIOL; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33835.1 | 9e-27 | C3H family protein |