PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca21030.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family AP2
Protein Properties Length: 357aa    MW: 39571.2 Da    PI: 8.284
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca21030.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.94.5e-1776125155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Dca21030.1  76 SQYRGVTFYRRTGRWESHIWD------NgKQVYLGGFDTAHAAARAYDRAAIKFRG 125
                 78*******************......44************************997 PP
2AP241.24.1e-13168217154
         AP2   1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkle 54 
                 s+y+GV+ +k  grW+A+       g    +k+++lg f+++ eAa+a+++a+ + +
  Dca21030.1 168 SKYRGVTLHK-CGRWEAR---M---GqllGKKYIYLGLFDSELEAARAYDKAAIQCN 217
                 89********.7******...5...334336**********99*********98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.85E-1776135IPR016177DNA-binding domain
PfamPF008473.3E-1076125IPR001471AP2/ERF domain
PROSITE profilePS5103218.28177133IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.6E-1877133IPR001471AP2/ERF domain
SMARTSM003802.4E-3277139IPR001471AP2/ERF domain
CDDcd000188.58E-1277135No hitNo description
PfamPF008477.3E-9168218IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-16168226IPR016177DNA-binding domain
CDDcd000181.63E-24168228No hitNo description
PROSITE profilePS5103215.106169226IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-15169226IPR001471AP2/ERF domain
SMARTSM003802.5E-30169232IPR001471AP2/ERF domain
PRINTSPR003674.7E-6170181IPR001471AP2/ERF domain
PRINTSPR003674.7E-6208228IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MVDLNLTLHP PDSTSGYDTV SNAPTFNFEG ILGTSNCGYL GNDRGVYGPS RVGYVVMGQG  60
LSQVKKSRRG PRSRSSQYRG VTFYRRTGRW ESHIWDNGKQ VYLGGFDTAH AAARAYDRAA  120
IKFRGVDADI NFDVSDYEDD LKQMSNLTKE EFVHLLRRQS TGFSRGSSKY RGVTLHKCGR  180
WEARMGQLLG KKYIYLGLFD SELEAARAYD KAAIQCNGKE AVTNFDPTTY GDELMDETPF  240
GGGPNSLDLN LGIGNASSAD GHVKTHNLDG MLNMRAKSQN RISAVEMPPI CHGHRYLSEL  300
PTTWSDINSM SLPVYQERAV EKVAESDPWT TWARKLQGTQ TVPFYANAAS SGLDLAK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:20017947, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010696369.11e-133PREDICTED: AP2-like ethylene-responsive transcription factor TOE3
SwissprotQ84TB52e-97AP22_ORYSJ; APETALA2-like protein 2
TrEMBLA0A0J8B7061e-132A0A0J8B706_BETVU; Uncharacterized protein
STRINGXP_010696369.11e-133(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.24e-95AP2 family protein
Publications ? help Back to Top
  1. Lee DY,An G
    Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice.
    Plant J., 2012. 69(3): p. 445-61
    [PMID:22003982]
  2. Wang L, et al.
    Coordinated regulation of vegetative and reproductive branching in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
    [PMID:26631749]
  3. Dai Z,Wang J,Zhu M,Miao X,Shi Z
    OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
    Front Plant Sci, 2016. 7: p. 1891
    [PMID:28066457]