PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca20984.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family MYB
Protein Properties Length: 369aa    MW: 41351.1 Da    PI: 6.39
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca20984.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.93.5e-111451148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEde+lvd+++++G g          + R++k+c++rw +yl
       Dca20984.1 14 KGPWTPEEDEKLVDYIQKHGYG----------LQRCGKSCRLRWTNYL 51
                     79******************99..........56************97 PP
2Myb_DNA-binding47.25.2e-1557100146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rgr++ eE++ +++++  lG++ W++Ia++++ gRt++++k++w++
       Dca20984.1  57 RGRFSCEEEDSIIHLHSVLGNK-WSAIAARLP-GRTDNEIKNYWNT 100
                      89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-17554IPR009057Homeodomain-like
PROSITE profilePS5129411.533951IPR017930Myb domain
SuperFamilySSF466891.03E-261198IPR009057Homeodomain-like
SMARTSM007174.1E-81353IPR001005SANT/Myb domain
PfamPF002494.2E-91451IPR001005SANT/Myb domain
CDDcd001671.08E-1016102No hitNo description
PROSITE profilePS5129422.93652106IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.4E-2455106IPR009057Homeodomain-like
SMARTSM007179.8E-1356104IPR001005SANT/Myb domain
PfamPF002491.3E-1357100IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MGRAPCCDKN GLKKGPWTPE EDEKLVDYIQ KHGYGLQRCG KSCRLRWTNY LRPDIKRGRF  60
SCEEEDSIIH LHSVLGNKWS AIAARLPGRT DNEIKNYWNT NIRKRLLRMG IDPVTHSPRL  120
DLLDLSSIFR NSASLCNPPS TSSQMNMSAL LGLQQSSMVN PELLKLASSI LSTQRQNPNS  180
SLMQHFQRNG YSSNSHLQNN FDNTVVQGTQ FQTPFQNPIS RCNTMTAATA MTTASASFAP  240
LFDESHLIDP NFEQYSTNIQ NSGQLWQSNE FVDMNPTNLS CYGSDQGLII DPSLSNDSTF  300
YQNIMNYASS VMSTPSSSPT PLNSSTNSTT NVNTNANEDE KESYCSEMVK FEISDIVDVN  360
QFMLARANC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-28121065108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in osmotic stress and wounding signaling pathways (Probable). Contributes to basal resistance against the herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:19517001, ECO:0000305|PubMed:12857823}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by light (PubMed:8980549). Induced by wounding, salt stress and abscisic acid (PubMed:12857823). Induced by the lepidopteran herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:12857823, ECO:0000269|PubMed:19517001, ECO:0000269|PubMed:8980549}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019106622.11e-163PREDICTED: protein ODORANT1-like
RefseqXP_019106623.11e-163PREDICTED: protein ODORANT1-like
RefseqXP_019106624.11e-163PREDICTED: protein ODORANT1-like
RefseqXP_019106625.11e-163PREDICTED: protein ODORANT1-like
RefseqXP_019106626.11e-163PREDICTED: protein ODORANT1-like
RefseqXP_019106627.11e-163PREDICTED: protein ODORANT1-like
RefseqXP_019106628.11e-163PREDICTED: protein ODORANT1-like
RefseqXP_019106629.11e-163PREDICTED: protein ODORANT1-like
RefseqXP_019106630.11e-163PREDICTED: protein ODORANT1-like
SwissprotQ9LDR81e-101MY102_ARATH; Transcription factor MYB102
TrEMBLA0A0U3IU111e-151A0A0U3IU11_MESCR; MYB transcription factor
STRINGXP_010686260.11e-162(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21440.13e-98MYB-like 102
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]
  4. Zhu L,Guo J,Ma Z,Wang J,Zhou C
    Arabidopsis Transcription Factor MYB102 Increases Plant Susceptibility to Aphids by Substantial Activation of Ethylene Biosynthesis.
    Biomolecules, 2019.
    [PMID:29880735]