PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca20773.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family MYB
Protein Properties Length: 410aa    MW: 45356.9 Da    PI: 6.3936
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca20773.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.71.5e-142875148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEd++l+ +    G g+W+ +ar  g+ R++k+c++rw +yl
       Dca20773.1 28 KGLWSPEEDDKLISYMLTNGQGCWSDVARNAGLQRCGKSCRLRWINYL 75
                     678*******************************************97 PP
2Myb_DNA-binding52.51.1e-1681124146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+++++E+el+v+++ +lG++ W+ Ia++++ gRt++++k++w++
       Dca20773.1  81 RGAFSPQEEELIVHLHSLLGNR-WSQIAARLP-GRTDNEIKNFWNS 124
                      89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.5622375IPR017930Myb domain
SuperFamilySSF466891.33E-2726122IPR009057Homeodomain-like
SMARTSM007174.1E-112777IPR001005SANT/Myb domain
PfamPF002491.7E-132875IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-222982IPR009057Homeodomain-like
CDDcd001672.38E-93175No hitNo description
PROSITE profilePS5129425.75476130IPR017930Myb domain
SMARTSM007178.4E-1680128IPR001005SANT/Myb domain
PfamPF002493.6E-1581124IPR001005SANT/Myb domain
CDDcd001672.67E-1183123No hitNo description
Gene3DG3DSA:1.10.10.601.2E-2583131IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:1901348Biological Processpositive regulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MRKPNDPAGK NGNSGGITGT VNGVKLRKGL WSPEEDDKLI SYMLTNGQGC WSDVARNAGL  60
QRCGKSCRLR WINYLRPDLK RGAFSPQEEE LIVHLHSLLG NRWSQIAARL PGRTDNEIKN  120
FWNSTIKKRL KSSSSSSSPN ASDNSSLLTE QRDGFMPIQE SGIMPMYITT NNSTTSTSIS  180
SFMHSMNNAL AHHHTNNNNV VLETLPNMVH HHDASTVDMT STVGHDGYLD GGSSCMTMAP  240
MHGMSNNGDG LMCGSTYGML GSHINYNNNN NNNNSNNNIN NNDYGLVHGE VSLPSSESIS  300
VEENAQICDN IVFGRNTNHN HHNHNHHFDK NSINHHFDHN NQIISTLNNN TTAVISNSIT  360
SCKTIVDHQT VAGFDNSWGG GEDLKLGEWD LEDLMRDVSC FPFIDYQVEE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-27261325110B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00336DAPTransfer from AT3G08500Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021728980.11e-139transcription factor MYB83-like
TrEMBLA0A0K9RB901e-119A0A0K9RB90_SPIOL; Uncharacterized protein
STRINGXP_010673636.11e-125(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08500.13e-68myb domain protein 83