PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca20768.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family NF-YA
Protein Properties Length: 295aa    MW: 32553.8 Da    PI: 6.7543
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca20768.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA101.67.3e-32176232158
   CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                 +ep+YVNaKQy++Il+RRq Rak+e e+kl +k rkpylheSRh+hAlrR+Rg+gGrF
  Dca20768.1 176 QEPVYVNAKQYHGILRRRQVRAKAELERKL-IKVRKPYLHESRHQHALRRARGTGGRF 232
                 69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005213.8E-35174235IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.835175235IPR001289Nuclear transcription factor Y subunit A
PfamPF020458.7E-27177232IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.8E-24178200IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860180200IPR018362CCAAT-binding factor, conserved site
PRINTSPR006162.8E-24209232IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010262Biological Processsomatic embryogenesis
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0055046Biological Processmicrogametogenesis
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MPSKSNQPEP SSQTVLPTVP CSEHWWRAPV YDHFALHDTG SNPSQHALPL NPLQVTQSKE  60
VQSESNVGDY DDDDDDTSKD SDTTGSTSTG RDGNSGLEGQ KNQYGESNMS FASRDCLPHH  120
PQPELVGHSI GCATVPYPDL YYGGMMVPYG PQPMVPPPPF YGMHQPRMPL PLEMAQEPVY  180
VNAKQYHGIL RRRQVRAKAE LERKLIKVRK PYLHESRHQH ALRRARGTGG RFAKKGEAES  240
SNHMAEENDK TSGGPRSHDS ANGSEERAAE GQSSQQWGGG SMSSDQAPQR ALAMR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A1e-18176240266NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010673645.11e-139PREDICTED: nuclear transcription factor Y subunit A-1
SwissprotQ9LXV56e-52NFYA1_ARATH; Nuclear transcription factor Y subunit A-1
TrEMBLA0A0K9RHN01e-111A0A0K9RHN0_SPIOL; Uncharacterized protein
STRINGXP_010673645.11e-138(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20910.12e-41nuclear factor Y, subunit A9
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Siriwardana CL, et al.
    NUCLEAR FACTOR Y, Subunit A (NF-YA) Proteins Positively Regulate Flowering and Act Through FLOWERING LOCUS T.
    PLoS Genet., 2016. 12(12): p. e1006496
    [PMID:27977687]
  3. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]