PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca20193.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family MYB
Protein Properties Length: 296aa    MW: 33876.7 Da    PI: 9.8413
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca20193.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.41.3e-161156147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg W + Ed +l+++v+++G+ +W++Ia+++  gR++k+c++rw++ 
       Dca20193.1 11 RGHWRPAEDNKLKELVALYGPQNWNLIAEKLD-GRSGKSCRLRWFNQ 56
                     899*****************************.***********996 PP
2Myb_DNA-binding56.28.1e-1863106146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r ++T+eE+++l +a++ +G++ W++Iar ++ gRt++ +k++w+ 
       Dca20193.1  63 RRAFTEEEEDRLMQAHRVYGNK-WALIARLFP-GRTDNAVKNHWHV 106
                      678*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.502657IPR017930Myb domain
SMARTSM007172.9E-141059IPR001005SANT/Myb domain
SuperFamilySSF466891.57E-2811104IPR009057Homeodomain-like
PfamPF002493.6E-161156IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.4E-261264IPR009057Homeodomain-like
CDDcd001672.80E-131455No hitNo description
PROSITE profilePS5129427.00458112IPR017930Myb domain
SMARTSM007171.4E-1462110IPR001005SANT/Myb domain
PfamPF002492.6E-1563105IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.1E-2165111IPR009057Homeodomain-like
CDDcd001671.60E-1165105No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MKNKETKVCA RGHWRPAEDN KLKELVALYG PQNWNLIAEK LDGRSGKSCR LRWFNQLDPR  60
INRRAFTEEE EDRLMQAHRV YGNKWALIAR LFPGRTDNAV KNHWHVIMAR KYREQSSAFR  120
RRRHIVVPPN NNTTTTNNNS DNNNNNNDYG MKSSSSSLSS MEEEFQSSYD KNMNNNNNVH  180
FGQTVIPNHS FAFCAQQSPL DFFSGPNNYN KMSMFNTRRC LDRSIPTSSM QHQQSIYNNN  240
ITTFVPTFQL VCSPQKQPYS VSSSSSLLNL EGGNSSDPST SPSHPPFIDF LGVGAI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-3391115107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00222DAPTransfer from AT1G69560Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021739929.11e-107transcription factor MYB117-like
TrEMBLA0A0K9R5Q71e-100A0A0K9R5Q7_SPIOL; Uncharacterized protein
STRINGXP_010683161.11e-103(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.12e-75myb domain protein 105