PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca20136.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

CPP

Protein Properties

Length: 289aa MW: 32819.9 Da PI: 9.842

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca20136.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	52.8	8.1e-17	28	66	1	39
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkks ClkkYCeC++a++ Cse C+Ce+CkN Dca20136.1 28 RHKRGCNCKKSMCLKKYCECYQANVGCSEGCRCEGCKNV 66 589***********************************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51634	18.999	1	68	IPR005172	CRC domain
SMART	SM01114	1.9E-17	28	69	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	5.7E-12	30	65	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence Send to blast
MLGVLRFENR GHGNLQEVQN LSTPASARHK RGCNCKKSMC LKKYCECYQA NVGCSEGCRC 60 EGCKNVFGIR EEYKIIRRFV VKKAADEMSE EIVDRKHENT TVGSNFGNSR VHASPNVIPT 120 TPTLQYSDLR KNTQKSRHPS CNFYRRPILR MMFCHPMKTP LTRSNSAATL IAPPSSNAIG 180 LQDMSLPIQP HVMNESAVPS TTGSLHHLKS GVAYNMMFTE HEIICLRRAR LSICTMARSI 240 MEMERKVNEN VYKPEGENRK TDTQKWASRK LLQENAENMA SKKFLIALF

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14770.1	9e-24	TESMIN/TSO1-like CXC 2