PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca19769.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family HSF
Protein Properties Length: 489aa    MW: 54515.8 Da    PI: 5.4727
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca19769.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.61.3e-35241142101
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl k+y++++d ++++++sws+++nsf+v+++ efa+ +Lp+yFkh+nf+SF+RQLn+YgF+k++ e+         weF++++F k++k+ll++i+
    Dca19769.1  24 FLLKTYDMVDDTSTDDIVSWSNTNNSFIVWNPLEFARVLLPTYFKHNNFSSFIRQLNTYGFHKIDPER---------WEFQNEEFVKDQKHLLKNIH 111
                   9****************************************************************999.........******************** PP

                   XXX CS
  HSF_DNA-bind  99 rkk 101
                   r+k
    Dca19769.1 112 RRK 114
                   *98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467853.67E-3520113IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.2E-3820113IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.4E-5920113IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004478.7E-3124113IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.4E-192447IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.4E-196274IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406387IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.4E-197587IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MDLMPSISIV NTAGGGGGGG PAPFLLKTYD MVDDTSTDDI VSWSNTNNSF IVWNPLEFAR  60
VLLPTYFKHN NFSSFIRQLN TYGFHKIDPE RWEFQNEEFV KDQKHLLKNI HRRKPIHSHS  120
HPPPDPERAA FEEEIEKLTR EKNELDAKVS SFRMRECLAK SHLEDIKQRL SGMNQRQENL  180
LTLLQKSVLD PTFVELFTQK IDAMYLSAYN KKRRLPPADN ILSVPDNYFA DYQIHGKHDV  240
SSLHQQDMSN KLNLELSTAV SNINLVSNST HSSNEDWGSP PRKSSGVELN DAEMQTSTLP  300
FATEPVKLSD TDTCLAFKID SSPADKIGSK EIPPLQESVV LSEEAEGHIC CQLNLSLASS  360
SIQVDPNASS SRITQMDLDI AGTTEPRPES SADKRDRITG SLKDNLPAIN ATKNTSLFHG  420
TDKSKQGSTP AAPPRVNDLF WEQFLTERPG SSDAEEASSS YRALPNDEDD KGSNHGMSKT  480
AKNLGKLTL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B6e-221511317129Heat shock factor protein 1
5d5v_B6e-221511317129Heat shock factor protein 1
5d5v_D6e-221511317129Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010673379.10.0PREDICTED: heat stress transcription factor A-5
TrEMBLA0A0J8CRZ70.0A0A0J8CRZ7_BETVU; Uncharacterized protein
STRINGXP_010673379.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13980.11e-120HSF family protein