PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca19668.2
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family ERF
Protein Properties Length: 452aa    MW: 48850.3 Da    PI: 5.6901
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca19668.2genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.61.2e-11169214755
         AP2   7 rwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 r++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Dca19668.2 169 RRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 214
                 89**********988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103216.99163222IPR001471AP2/ERF domain
CDDcd000182.84E-21169224No hitNo description
PfamPF008479.9E-7169214IPR001471AP2/ERF domain
SMARTSM003803.9E-26169228IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-15170222IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-14170223IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MVIMNKSNNI NNGGGTGSQS LSLSMGTGNH SGAAALPLLV GGGGGGDGGG DVESSLSENS  60
SSKQQSDSVI SNNNTITNNN NNNNVTNNNN VTNNNVDAQS GAIVEVVPRK SIETFGQHIG  120
GPGDMKLICG IIVVEEKGKL ERADKISDYE KEIEDMKHMT RQEYVASLRR HHQHGRWQAR  180
IGRVAGNKDL YLGTFSTQEE AAEAYDIAAI KFRGLNAVTN FEINRYDVKT ILESTNLPIG  240
GAAKRLKEAE QLNAHDLLRA AAVAAQNEHQ QNNHNLLADP AGTQNFYSWP GLAYQQTQTQ  300
PPLTLQYSYA NTGHQQQQKV WCKQEQETTN ASTNFHDFHQ SSVGQFYQMH NLMGLDDTTN  360
NNSSNSDIYG MPYATAVQVA DGNTYDNYYT YLSNPTTNHN SSGVRGAVGT YDQGSACTNW  420
ASTAIPTLAS TRTVDMGAVG GAVPTFTVWN DT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021772295.11e-115AP2-like ethylene-responsive transcription factor AIL1
TrEMBLA0A0K9RWF13e-94A0A0K9RWF1_SPIOL; Uncharacterized protein
TrEMBLB9HYI05e-93B9HYI0_POPTR; Uncharacterized protein
STRINGXP_010674006.11e-101(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51190.16e-52AP2 family protein