PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca19668.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family ERF
Protein Properties Length: 297aa    MW: 32951.1 Da    PI: 6.6478
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca19668.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.46.3e-121459755
         AP2  7 rwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                r++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Dca19668.1 14 RRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 59
                89**********988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103216.99867IPR001471AP2/ERF domain
PfamPF008475.4E-71459IPR001471AP2/ERF domain
SMARTSM003803.9E-261473IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-151567IPR001471AP2/ERF domain
SuperFamilySSF541715.56E-151568IPR016177DNA-binding domain
CDDcd000183.85E-211569No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MKHMTRQEYV ASLRRHHQHG RWQARIGRVA GNKDLYLGTF STQEEAAEAY DIAAIKFRGL  60
NAVTNFEINR YDVKTILEST NLPIGGAAKR LKEAEQLNAH DLLRAAAVAA QNEHQQNNHN  120
LLADPAGTQN FYSWPGLAYQ QTQTQPPLTL QYSYANTGHQ QQQKVWCKQE QETTNASTNF  180
HDFHQSSVGQ FYQMHNLMGL DDTTNNNSSN SDIYGMPYAT AVQVADGNTY DNYYTYLSNP  240
TTNHNSSGVR GAVGTYDQGS ACTNWASTAI PTLASTRTVD MGAVGGAVPT FTVWNDT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021772295.15e-96AP2-like ethylene-responsive transcription factor AIL1
TrEMBLA0A0K9RWF18e-96A0A0K9RWF1_SPIOL; Uncharacterized protein
STRINGXP_010674006.12e-91(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20840.13e-47AP2 family protein